IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
R: Rearranged
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

The Sandbar shark (Carcharhinus plumbeus) IGIV genes and allele have a temporary designation based on the IMGT gene name nomenclature rules for the unmapped genes, the incomplete loci, or the cDNAs in the absence of germline genes.
Sandbar shark (Carcharhinus plumbeus) genes are designated by a number for the subgroup followed by the letter S and a number.

IMGT subgroup	IMGT gene name	IMGT allele name	Fct	R	T	Pr	Positions in the locus	IMGT/LIGM-DB reference sequences							IMGT/LIGM-DB sequences from the literature
IMGT subgroup	IMGT gene name	IMGT allele name	Fct	R	T	Pr	Positions in the locus	Strain	Clone names	Accession numbers	Positions in the sequence	Secondary accession numbers			Strain	Clone names	Accession numbers	Positions in the sequence
IGIV1	IGIV1S1	IGIV1S1*01	(F)		+	+				U11		U01657	[2]	~VJ
	IGIV1S2	IGIV1S2*01	(F)		+	+				T11		U34992	[3]	~VJ
	IGIV1S3	IGIV1S3*01	(F)		+	+				T46		U35006	[3]	~VJ
	IGIV1S4	IGIV1S4*01	(F)		+	+				U31		U35007	[3]	~VJ
	IGIV1S5	IGIV1S5*01	(F)		+	+				T54		U35008	[3]	~VJ
	IGIV1S6	IGIV1S6*01	(F)		+	+				Shlc5.1		M81314	[1]	#c

#c: rearranged cDNA.
~VJ: VJ genomic DNA rearranged in the cassette.

IMGT references:

[1] Hohman V.S. et al., Proc. Natl. Acad. Sci. U.S.A., 89, 276-280 (1992). PMID:1729697
[2] Hohman V.S. et al., Proc. Natl. Acad. Sci. U.S.A., 90, 9882-9886 (1993). PMID:8234330
[3] Hohman V.S. et al., J. Immunol., 155, 3922-3928 (1995). PMID:7561099

See also (IMGT Scientific chart):

Created:: 03/09/2003
Last updated:: 22/09/2023
Authors:: Dominique Scaviner

IMGT Repertoire (IG and TR)

Gene table: sandbar shark (Carcharhinus plumbeus) IGIV