IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
R: Rearranged
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

IMGT subgroup	IMGT gene name	IMGT allele name	Fct		Chromosomal localization	R	T	Pr	IMGT/LIGM-DB locus reference sequences						IMGT/LIGM-DB sequences from the literature
IMGT subgroup	IMGT gene name	IMGT allele name	Fct		Chromosomal localization	R	T	Pr	Breed	Clone names	Accession numbers	Positions in the sequence (L-V-GENE-UNIT)	Secondary accession numbers		Breed		Clone names	Accession numbers	Positions in the sequence (L-V-GENE-UNIT)
TRGV2	TRGV2-1	TRGV2-1*01	F			A2				Abyssinian	CM001379.3		IMGT000036	MAP	10089..10571
	TRGV2-2	TRGV2-2*01	F			A2	+	+		Abyssinian	CM001379.3		IMGT000036	MAP	59013..59497
	TRGV2-3	TRGV2-3*01	F			A2	+	+		Abyssinian	CM001379.3		IMGT000036	MAP	99610..100085
	TRGV2-4	TRGV2-4*01	F			A2	+	+		Abyssinian	CM001379.3		IMGT000036	MAP	254748..255232
TRGV5	TRGV5-1	TRGV5-1*01	P	(1)		A2				Abyssinian	CM001379.3		IMGT000036	MAP	112403..112707	(6)
	TRGV5-2	TRGV5-2*01	P	(2)		A2				Abyssinian	CM001379.3		IMGT000036	MAP	complement(176968..177624)
	TRGV5-3	TRGV5-3*01	F			A2	+	+		Abyssinian	CM001379.3		IMGT000036	MAP	complement(224778..225438)
	TRGV5-4	TRGV5-4*01	P	(3)		A2				Abyssinian	CM001379.3		IMGT000036	MAP	268362..268668	(6)
TRGV6	TRGV6-1	TRGV6-1*01	P	(4)		A2				Abyssinian	CM001379.3		IMGT000036	MAP	complement(243613..243912)	(6)
TRGV7	TRGV7-1	TRGV7-1*01	F			A2				Abyssinian	CM001379.3		IMGT000036	MAP	complement(232245..232748)
TRGVA	TRGVA	TRGVA*01	P	(1)		A2				Abyssinian	CM001379.3		IMGT000036	MAP	115155..115442	(6)
TRGVB	TRGVB	TRGVB*01	P	(5)		A2				Abyssinian	CM001379.3		IMGT000036	MAP	complement(174614..174875)	(6)

MAP: Mapped reference sequences.

IMGT notes:

(1) frameshifts in V-REGION: several insertions and deletions, No L-PART1, No L-PART2.
(2) frameshift in L-PART1, frameshifts in V-REGION: several insertions and deletions.
(3) frameshift in V-REGION: several insertions and deletions, No L-PART2.
(4) several STOP-CODON in V-REGION: positions 55 and 63, no V-RS.
(5) frameshifts in V-REGION: several insertions and deletions, No V-RS, No -L-PART1.
(6) Positions of V-REGION.

More information:

See also (IMGT Scientific chart):

Created:: 19/02/2019
Last updated:: 22/09/2023
Authors:: Géraldine Folch

IMGT Repertoire (IG and TR)

Gene table: domestic cat (Felis catus) TRGV