IMGT Repertoire (IG and TR)
Locus in genome assembly: Chimpanzee (Pan troglodytes) TRA/TRD locus
Chimpanzee (Pan troglodytes) TRA/TRD locus
| IMGT locus | TRA/TRD locus | TRA/TRD locus | TRA/TRD locus | |
|---|---|---|---|---|
| IMGT locus ID: Pantro_TRA/TRD_1 | IMGT locus ID: Pantro_TRA/TRD_2 | IMGT locus ID: Pantro_TRA/TRD_3 | ||
| Taxonomy | Pan troglodytes (Chimpanzee), taxon:9598, isolate: AG18354 | Pan troglodytes (Chimpanzee), taxon:9598, isolate:Clint | Pan troglodytes (Chimpanzee), taxon:9598, isolate: Clint | |
| Genome assembly | NHGRI_mPanTro3-v2.1_pri | Clint_PTR_hifiasm-v0.15.2.pri | Clint_PTR_hifiasm-v0.15.2.alt | |
| GenBank assembly ID | GCA_028858775.3 | GCA_030128855.1 | GCA_030128845.1 | |
| RefSeq assembly ID | GCF_028858775.2 (1) | |||
| BAC library | ||||
| Chromosome | 15 | |||
| Chromosome/Contig sequence ID and locus positions (GenBank assembly) | CM054449.2 (20000270-20949609) | JARRAI010000075.1 complement(11825391..12771936) | JARRAJ010000047.1 (3519458..4450457) | |
| Chromosome sequence ID and locus positions (RefSeq assembly) | NC_072413.2 (20000270-20949609) | |||
| IMGT locus orientation on the chromosome | FWD | |||
| IMGT/LIGM-DB locus reference sequence (ID) | IMGT000279 | IMGT000283 | IMGT000286 | |
| IMGT/LIGM-DB locus reference sequence length (bp) | 949340 | 946546 | 931000 |
IMGT notes:
- (1) sequences differ from GenBank assembly
More information:
- Gene table: Chimpanzee (Pan troglodytes) TRAV
- Gene table: Chimpanzee (Pan troglodytes) TRAJ
- Gene table: Chimpanzee (Pan troglodytes) TRAC
- Gene table: Chimpanzee (Pan troglodytes) TRDV
- Gene table: Chimpanzee (Pan troglodytes) TRDD
- Gene table: Chimpanzee (Pan troglodytes) TRDJ
- Gene table: Chimpanzee (Pan troglodytes) TRDC
- Chimpanzee (Pan troglodytes) TRA locus (on chromosome 15) gene repertoire per assembly
- Chimpanzee (Pan troglodytes) TRD locus (on chromosome 15) gene repertoire per assembly
- Created:
- 21/07/25
- Last updated:
- 28/01/2026
- Authors:
- Hugo Magnani, Joumana Jabado-Michaloud
