IMGT MHC entry from gene to protein for Oncorhynchus mykiss MH1-D

IMGT gene name and definition

Chromosomal localization

Gene exon/intron organization

MH1-D Gene exon/intron organization
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Corresponding protein database accession numbers

Allele names IMGT/LIGM-DB UniProt Protein isoform
Accession numbers Sequence lengths (nt) Accession numbers Sequence lengths (AA)
Oncmyk MH1-D*01 AB162343 1116 Q5FBT9 372
Oncmyk MH1-D*02 AY523667 1116 Q1XD43 372
Oncmyk MH1-D*02 or *03 or *04 *01 or *12 DQ091779 204 Q2QF18 68
Oncmyk MH1-D*02 or *04 or *01 or *06 or *12 EU036645 192 B1NQV5 64
EU036638 540 B1NQU8 180
Oncmyk MH1-D*03 AY523668 1116 Q1XD42 372
Oncmyk MH1-D*04 AY523669 1116 Q1XD41 372
Oncmyk MH1-D*05 AY523666 1113 Q1XD44 371
Oncmyk MH1-D*06 HE603967 1065 G4VUZ7 355
DQ091780 204 Q2QF17 68
Oncmyk MH1-D*07 DQ091781 204 Q2QF16 68
Oncmyk MH1-D*08 AY523670 768 Q1XD40 256
Oncmyk MH1-D*09 AY523671 1113 Q1XD39 371
Oncmyk MH1-D*10 DQ179632 252 84
Oncmyk MH1-D*11 HE603962 1065 G4VUZ2 355
HE603964 G4VUZ4 355
HE603966 G4VUZ6 355
HE603969 G4VUZ9 355
Oncmyk MH1-D*12 HE603965 1068 G4VUZ5 356
Oncmyk MH1-D*13 HE603960 1065 G4VUZ0 355
HE603961 G4VUZ1 355
HE603963 G4VUZ3 355
HE603968 G4VUZ8 355

Genomic sequence

Coding region sequence

The coding region (CODING-REGION) sequence starts from INIT-CODON (or its encoded amino acid) to STOP-CODON (not included).
The nucleotide sequence is extracted from cDNA (c) sequences and/or is built by artificial exon joining from genomic DNA (g) sequences. The amino acid sequence is the translation of the nucleotide sequence.

Oncmyk MH1-D*01: AB162343(g)

Coding region structure

coding region structure fish MH1-D

Nucleotide sequence

1        atgaagggtt ttatcctcat ggtcctggga atagtgcacc ttcatgaagc atttggtgtg

61       actcactccc tgacgcattt ctacaccgca tcttctgaca ttcccaactt cccagagttt

121      gtgtttgtgg ggatggtgga tggtgttcag atggttcact atgacagcaa catccagaaa

181      gtggtgcccg aacaggactg gatgaagcag acagacgcag agttctgtga gaaggagaga

241      gagaatttat tttattccca gcagtcattc aaagctgaag tcgctactct aaagcagcat

301      tttaaccaaa gtggaggagt ccacattctc cagtacatgt atggctgctc acgggatgat

361      gagactgaac agacagaggg gtttggacag ctgggttata atggggagaa cttccttgag

421      tatgacatga agacattaac ttggaaatct ctaaaacagc aacccaattt catgcaggat

481      gagtggaaca gtgacaccag tagactgtta ttctggaaga actacttcac ccagacctgc

541      attgagtgtc tgaagaagca ggtggacaat aggaagagca ctctgatgag gacagtccct

601      ccctcagtgt ctctgctcca gaagagcccc tcttctccag tgacctgcca cgctacaggt

661      ttctacccca gtggagtcat ggtgttctgg cagaaagacg gacaaggtca ccaggaaggt

721      gtggagaatg gagagactct ccccaacaat gatagaacct tccagaaaag cacccacctc

781      acagtgacgc ctgaggagtg gaagaacaac aagtatcagt gtgtggttca ggtcactggt

841      atcaaggagg acttcatcaa ggttctgact gagtctgaga tccagaccaa ctggaaggac

901      ccagccccca acattgtccc catcattgga ggggtggtag ctctcctcct ggttgttgtt

961      gttgttgttg ttgtggtcgt catttggaag aagaagaaga agaaagggtt tgttccagcc

1021     agcactaatg acactgactc tgcgtactct ggggaaggtc tcctgaagac ttcagtcctc

1081     tctgcacttc tgaagcagct gaagacagta acgaaataa
Nucleotide sequence in FASTA format (without gaps) Oncmyk MH1-D*01

Amino acid sequence

1        MKGFILMVLG IVHLHEAFGV THSLTHFYTA SSDIPNFPEF VFVGMVDGVQ MVHYDSNIQK

61       VVPEQDWMKQ TDAEFCEKER ENLFYSQQSF KAEVATLKQH FNQSGGVHIL QYMYGCSRDD

121      ETEQTEGFGQ LGYNGENFLE YDMKTLTWKS LKQQPNFMQD EWNSDTSRLL FWKNYFTQTC

181      IECLKKQVDN RKSTLMRTVP PSVSLLQKSP SSPVTCHATG FYPSGVMVFW QKDGQGHQEG

241      VENGETLPNN DRTFQKSTHL TVTPEEWKNN KYQCVVQVTG IKEDFIKVLT ESEIQTNWKD

301      PAPNIVPIIG GVVALLLVVV VVVVVVVIWK KKKKKGFVPA STNDTDSAYS GEGLLKTSVL

361      SALLKQLKTV TK*
Amino acid sequence in FASTA format (without gap) Oncmyk MH1-D*01

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