IMGT Repertoire (MH)

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Other MHC entries

Mus musculus: H2-AB

IMGT MHC entry from gene to protein for Mus musculus MH2-AA

IMGT gene name and definition

IMGT gene name: Mus musculus MH2-AA
IMGT gene definition: histocompatibility 2, class II antigen A, alpha

Chromosomal localization

Locus name:
Chromosome: 17
Chromosomal localization: 17B1; 17 18.65cM

Gene exon/intron organization

Legend:

Length of the exons and introns are in base pairs.
Colors are according to IMGT Color menu for regions and domains

Corresponding protein database accession numbers

Allele name	Accession numbers		Number of amino acids	Protein isoform
Allele name	Nucleotide databases	Protein databases	Number of amino acids	Protein isoform
MH2-AA*04	K01923	P04228	256aa	1
MH2-AA*05	AK170931	Tr:Q549Q2	243aa	1
MH2-AA*08	BC019721	P14434	256aa	1
MH2-AA*10	AF065910	Tr:Q549Q3	233aa	1
MH2-AA*12	X52643	P23150	254aa	1
MH2-AA*14	K01925	P04227	221aa	1
MH2-AA*16	M11358	P14437	233aa	1

IMGT references:

[1] Carninci P. et al., Meth. Enzymol. 303, 19-44 (1999). PMID:10349636
[2] Strausberg R.L. et al., Proc. Natl. Acad. Sci. U.S.A. 99, 16899-16903 (2002). PMID:12477932
[3] Benoist C.O. et al., Cell 34, 169-177 (1983). PMID:6309407
[4] Landais D. et al., Proc. Natl. Acad. Sci. U.S.A. 82, 2930-2934 (1985). PMID:2581258
[5] Bishop G.A. et al., Immunogenetics 28, 184-192 (1988). PMID:3137158
[6] Acha-Orbea H. and Scarpellino L. Immunogenetics 34, 57-59 (1991). PMID:1855817

Genomic sequence

Coding region sequence

The coding region (CODING-REGION) sequence starts from INIT-CODON (or its encoded amino acid) to STOP-CODON (not included).
The nucleotide sequence is extracted from cDNA (c) sequences and/or is built by artificial exon joining from genomic DNA (g) sequences. The amino acid sequence is the translation of the nucleotide sequence.

MH2-AA*01: NC_000083(g)

Nucleotide sequence

1        atgccgcgca gcagagctct gattctgggg gtcctcgccc tgaccaccat gctcagcctc

61       tgtggaggtg aagacgacat tgaggccgac cacgtaggca cctatggtat aagtgtatat

121      cagtctcctg gagacattgg ccagtacaca tttgaatttg atggtgatga gttgttctat

181      gtggacttgg ataagaagga gactgtctgg atgcttcctg agtttggcca attggcaagc

241      tttgaccccc aaggtggact gcaaaacata gctgtagtaa aacacaactc gcgagtattg

301      actaagaggt caaattccac cccagctacc aatgaggctc ctcaagcgac tgtgttcccc

361      aagtcccctg tgctgctggg tcagcccaac accctcatct gctttgtgga caacatcttc

421      cctcctgtga tcaacatcac atggctcaga aatagcaagt cagtcgcaga cggtgtttat

481      gagaccagct tcttcgtcaa ccgtgactat tccttccaca agctgtctta tctcaccttc

541      atcccttctg acgatgacat ttatgactgc aaggtggaac actggggcct ggaggagccg

601      gttctgaaac actgggaacc tgagattcca gcccccatgt cagagctgac agagactgtg

661      gtctgtgccc tggggttgtc tgtgggcctt gtgggcatcg tggtgggcac catcttcatc

721      attcaaggcc tgcgatcagg tggcacctcc agacacccag ggcctttatg a

Nucleotide sequence in FASTA format (without gaps) MH2-AA*01

Amino acid sequence

1        MPRSRALILG VLALTTMLSL CGGEDDIEAD HVGTYGISVY QSPGDIGQYT FEFDGDELFY

61       VDLDKKETVW MLPEFGQLAS FDPQGGLQNI AVVKHNSRVL TKRSNSTPAT NEAPQATVFP

121      KSPVLLGQPN TLICFVDNIF PPVINITWLR NSKSVADGVY ETSFFVNRDY SFHKLSYLTF

181      IPSDDDIYDC KVEHWGLEEP VLKHWEPEIP APMSELTETV VCALGLSVGL VGIVVGTIFI

241      IQGLRSGGTS RHPGPL*

Amino acid sequence in FASTA format (without gap) MH2-AA*01

Legend:

Colors are according to IMGT Color menu for regions and domains
Nucleotide and amino acid letters (in bold) in purple, green or blue are according to IMGT Color menu for splicing types.