IMGT Repertoire (MH)

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Other MHC entries

Mus musculus: H2-AA

IMGT MHC entry from gene to protein for Mus musculus MH2-AB

IMGT gene name and definition

IMGT gene name: Mus musculus MH2-AB
IMGT gene definition: histocompatibility 2, class II antigen A, beta 1

Chromosomal localization

Locus name:
Chromosome: 17
Chromosomal localization: 17B1; 17 18.64cM

Gene exon/intron organization

Legend:

Length of the exons and introns are in base pairs.
Colors are according to IMGT Color menu for regions and domains

Corresponding protein database accession numbers

MH2-AB	Accession numbers		Number of amino acids	Protein isoform
MH2-AB	Nucleotide databases	Protein databases	Number of amino acids	Protein isoform
MH2-AB*01	AF027865	P14483	265aa
MH2-AB*01	M27548	Q31140
MH2-AB*03	K00008	P01921	265aa
MH2-AB*06	AK156899	Q31135	263aa
MH2-AB*06	M15848	Q31135	263aa
MH2-AB*10	AF065913	O78197	252aa
MH2-AB*12	AF065912	O62867	250aa
MH2-AB*13	M13537	P06342	265aa
MH2-AB*14	M13538	P06343	263aa
MH2-AB*15	M13539	Q31184	263aa
MH2-AB*16	M63652, M86503, M86504, M86505, M86506, M86507	Q31131	263aa
MH2-AB*17	M13540	P06345	263aa
MH2-AB*20	M13541	P06346	252aa
MH2-AB*22	M21932	O19470	231aa

IMGT notes:

(1) Many EMBL entries. For retrieval of EMBL entries, search EMBL server with EMBL accession numbers (tables above).

Genomic sequence

Coding region sequence

The coding region (CODING-REGION) sequence starts from INIT-CODON (or its encoded amino acid) to STOP-CODON (not included).
The nucleotide sequence is extracted from cDNA (c) sequences and/or is built by artificial exon joining from genomic DNA (g) sequences. The amino acid sequence is the translation of the nucleotide sequence.

MH2-AB*01: AF027865(g)

Nucleotide sequence

1        atggctctgc agatccccag cctcctcctc tcggctgctg tggtggtgct gatggtgctg

61       agcagcccag ggactgaggg cggagactcc gaaaggcatt tcgtgtacca gttcatgggc

121      gagtgctact tcaccaacgg gacgcagcgc atacgatatg tgaccagata catctacaac

181      cgggaggagt acgtgcgcta cgacagcgac gtgggcgagc accgcgcggt gaccgagctg

241      gggcggccag acgccgagta ctggaacagc cagccggaga tcctggagcg aacgcgggcc

301      gagctggaca cggtgtgcag acacaactac gaggggccgg agacccacac ctccctgcgg

361      cggcttgaac agcccaatgt cgtcatctcc ctgtccagga cagaggccct caaccaccac

421      aacactctgg tctgctcagt gacagatttc tacccagcca agatcaaagt gcgctggttc

481      cggaatggcc aggaggagac ggtgggggtc tcatccacac agcttattag gaatggggac

541      tggaccttcc aggtcctggt catgctggag atgacccctc ggcggggaga ggtctacacc

601      tgtcacgtgg agcatcccag cctgaagagc cccatcactg tggagtggag ggcacagtct

661      gagtctgcct ggagcaagat gttgagcggc atcgggggct gcgtgcttgg ggtgatcttc

721      ctcgggcttg gccttttcat ccgtcacagg agtcagaaag gacctcgagg ccctcctcca

781      gcagggctcc tgcagtga

Nucleotide sequence in FASTA format (without gaps) MH2-AB*01

Amino acid sequence

1        MALQIPSLLL SAAVVVLMVL SSPGTEGGDS ERHFVYQFMG ECYFTNGTQR IRYVTRYIYN

61       REEYVRYDSD VGEHRAVTEL GRPDAEYWNS QPEILERTRA ELDTVCRHNY EGPETHTSLR

121      RLEQPNVVIS LSRTEALNHH NTLVCSVTDF YPAKIKVRWF RNGQEETVGV SSTQLIRNGD

181      WTFQVLVMLE MTPRRGEVYT CHVEHPSLKS PITVEWRAQS ESAWSKMLSG IGGCVLGVIF

241      LGLGLFIRHR SQKGPRGPPP AGLLQ*

Amino acid sequence in FASTA format (without gap) MH2-AB*01

Legend:

Colors are according to IMGT Color menu for regions and domains
Nucleotide and amino acid letters (in bold) in purple, green or blue are according to IMGT Color menu for splicing types.

IMGT links

IMGT Repertoire

Chromosomal localization: Vertebrate species (table)
Protein displays (MHC): G-DOMAIN, C-LIKE-DOMAIN
Alignment of alleles:
Strand and loop lengths (MHC): G-DOMAIN, C-LIKE-DOMAIN
Collier de perles (MHC): G-DOMAIN, C-LIKE-DOMAIN

External links

Nomenclature

MGI: 95895

Genome databases

Entrez Gene: 14960

Sequence databases

EMBL: many entries (tables above ) (1)
GenBank:
DDBJ:
Swiss-Prot: P14483, P01921, P06342, P06343, P06345, P06346
TrEMBL: Q31140, Q31135, Q31135, O78197, O62867, Q31184, Q31131, O19470
NCBI:

Structure databases

PDB: 1D9K, 1ES0, 1F3J, 1FNE, 1FNG, 1I3R, 1IAK, 1IAO, 1IEA, 1IEB, 1JL4, 1K2D, 1KT2, 1LNU, 1MUJ, 1R5V, 1R5W, 1U3H