IMGT Repertoire (RPI)
IMGT reference sequences in FASTA format:
Nucleotide sequences with gaps
The FASTA header contains:
IMGT accession number | gene and allele name | species | functionality | exon name | domain name | domain type | alternative splicing (if it is) | partial (if it is)
IMGT accession number | gene and allele name | species | functionality | exon name | domain name | domain type | alternative splicing (if it is) | partial (if it is)
>M17076|CD4*01|Mus musculus|F|EX1| atgtgccgagccatctctcttaggcgcttgctgctgctgctgctgcagctgt >M17076|CD4*01|Mus musculus|F|EX2|[D1]|V-LIKE| .cacaactcctagctgtcactcaagagaagacgctggtgctggggaaggaaggggaatca gcagaactgccctgcgagagttcccagaagaag..................atcacagtc ttcacctggaagttctct............gaccagaggaagattctggggcagcatggc aaa......ggtgtattaattagag >M17077|CD4*01|Mus musculus|F|EX3|[D1]|V-LIKE| gaggttcgccttcgcagtttgatcgttttgattccaaaaaaggggcatgggagaaaggat cgtttcctctcatcatcaataaacttaagatggaagactctcagacttatatctgtgagc tggag........................aacaggaaagaggaggtggagttgtgggtgt tcaaag >M17077|CD4*01|Mus musculus|F|EX4|[D2]|C-LIKE| tgaccttcagtccgggtaccagcctgttgcaagggcagagcctgaccctgaccttggata gcaactctaag......gtctctaaccccttgacagagtgcaaacacaaaaag....... ....................ggtaaagttgtcagtggttcc................... ............................................................ ..............aaagttctctccatgtccaacctaagggtt......caggacagcg acttctggaactgcaccgtgaccctggac.........cagaaaaagaactggttcggca tgacactctcagtgctgg >M17078|CD4*01|Mus musculus|F|EX5|[D3]|V-LIKE| ......gttttcagagcacagctatcacggcctataagagtgagggagagtcagcggagt tctccttcccactcaactttgcagaggaa............aacgggtggggagagctga tgtggaaggcagagaaggattctttcttccagccctggatctccttctccataaagaaca aagaggtgtccgtacaaaagtccaccaaagac...............ctcaagctccagc tgaaggaaacgctcccactcaccctcaagataccccaggtctcgcttcagtttgctggtt ctggcaacctgactctgactctggac............aaagggacactgcatcaggaag tgaacctggtggtgatgaaag >M17079|CD4*01|Mus musculus|F|EX6|[D4]|C-LIKE| ..................tggctcag...ctcaac......................... ..aatactttgacctgtgaggtgatgggacctacc............tctcccaagatga gactgaccctgaagcaggagaac...............caggaggccagggtctctgagg agcag....................................aaagtagttcaagtggtgg cccctgagaca........................gggctgtggcagtgtctactgagtg aaggt............gataaggtcaagatggactccaggatccagg >M17080|CD4*01|Mus musculus|F|EX7| ttttatccagaggggtgaaccagacagtgttcctggcttgcgtgctgggtggctccttcg gctttctgggtttccttgggctctgcatcctctgctgtgtcaggtgccggcaccaacag >M17080|CD4*01|Mus musculus|F|EX8| cgccaggcagcacgaatgtctcagatcaagaggctcctcagtgagaagaagacctgccag tgccccca >M17080|CD4*01|Mus musculus|F|EX9| ccggatgcagaagagccataatctcatctga >AC002397|CD4*02|Mus musculus|F|EX1| atgtgccgagccatctctcttaggcgcttgctgctgctgctgctgcagctgt >AC002397|CD4*02|Mus musculus|F|EX2|[D1]|V-LIKE| .cacaactcctagctgtcactcaagggaagacgctggtgctggggaaggaaggggaatca gcagaactgccctgcgagagttcccagaagaag..................atcacagtc ttcacctggaagttctct............gaccagaggaagattctggggcagcatggc aaa......ggtgtattaattagag >AC002397|CD4*02|Mus musculus|F|EX3|[D1]|V-LIKE| gaggttcgccttcgcagtttgatcgttttgattccaaaaaaggggcatgggagaaaggat cgtttcctctcatcatcaataaacttaagatggaagactctcagacttatatctgtgagc tggag........................aacaggaaagaggaggtggagttgtgggtgt tcaaag >AC002397|CD4*02|Mus musculus|F|EX4|[D2]|C-LIKE| tgaccttcagtccgggtaccagcctgttgcaagggcagagcctgaccctgaccttggata gcaactctaag......gtctctaaccccttgacagagtgcaaacacaaaaag....... ....................ggtaaagttgtcagtggttcc................... ............................................................ ..............aaagttctctccatgtccaacctaagggtt......caggacagcg acttctggaactgcaccgtgaccctggac.........cagaaaaagaactggttcggca tgacactctcagtgctgg >AC002397|CD4*02|Mus musculus|F|EX5|[D3]|V-LIKE| ......gttttcagagcacagctatcacggcctataagagtgagggagagtcagcggagt tctccttcccactcaactttgcagaggaa............aacgggtggggagagctga tgtggaaggcagagaaggattctttcttccagccctggatctccttctccataaagaaca aagaggtgtccgtacaaaagtccaccaaagac...............ctcaagctccagc tgaaggaaacgctcccactcaccctcaagataccccaggtctcgcttcagtttgctggtt ctggcaacctgactctgactctggac............aaagggacactgcatcaggaag tgaacctggtggtgatgaaag >AC002397|CD4*02|Mus musculus|F|EX6|[D4]|C-LIKE| tggctcagctcaacaatactttgacctgtgaggtgatgggacctacctctcccaagatga gactgaccctgaagcaggagaaccaggaggccagggtctctgaggagcagaaagtagttc aagtggtggcccctgagacagggctgtggcagtgtctactgagtgaaggtgataaggtca agatggactccaggatccagg >AC002397|CD4*02|Mus musculus|F|EX7| ..................tggctcag...ctcaac......................... ..aatactttgacctgtgaggtgatgggacctacc............tctcccaagatga gactgaccctgaagcaggagaac...............caggaggccagggtctctgagg agcag....................................aaagtagttcaagtggtgg cccctgagaca........................gggctgtggcagtgtctactgagtg aaggt............gataaggtcaagatggactccaggatccagg >AC002397|CD4*02|Mus musculus|F|EX8| cgccaggcagcacgaatgtctcagatcaagaggctcctcagtgagaagaagacctgccag tgccccca >AC002397|CD4*02|Mus musculus|F|EX9| ccggatgcagaagagccataatctcatctga
Created: 23/05/2007
Last updated: Friday, 22-Sep-2023 18:32:07 CEST
Author: Phani Vijay Garapati and Marie-Paule Lefranc
Editor: Chantal Ginestoux
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