clonNumExp {IMGTStatClonotype}R Documentation

Numbers of IMGT clonotypes (AA) in the two compared sets from the IMGT/HighV-QUEST output for clonotype expression

Description

This function allows the creation of a matrix containing the number of sequences assigned to IMGT clonotypes (AA) in the two compared sets from the IMGT/HighV-QUEST output with an IMGT gene of a given IMGT V, D or J group (IMGT clonotypes (AA) expression).

Usage

clonNumExp(data1, data2)

Arguments

data1

the first set from the IMGT/HighV-QUEST output without CDR3-IMGT outlier lengths issued from the function clonRem

data2

the second set from the IMGT/HighV-QUEST output without CDR3-IMGT outlier lengths issued from the function clonRem

Value

Matrix with IMGT gene names in rows and numbers of IMGT clonotypes (AA) in columns.

Examples


 Nexp<-clonNumExp(MID1,MID2)


[Package IMGTStatClonotype version 1.0.3 Index]