Citing IMGT/GENE-DB: Giudicelli V., Chaume D. and Lefranc M.-P.. Nucleic Acids Res., 33: D256 - D261 (2005). PMID: 15608191

IMGT/GENE-DB program version: 3.1.38 (08 November 2022)
IMGT/GENE-DB data updates

IMGT/GENE-DB DETAILED RESULTS

Selected genes: Homo sapiens IGKJ4

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IMGT gene name and definition

IMGT gene name:	Homo sapiens IGKJ4
IMGT gene definition:	Homo sapiens immunoglobulin kappa joining 4

Chromosomal localization

Locus name:	Homo sapiens IGK locus
Chromosome:	2
Chromosomal localization:	2p11.2

Localizations in genome assemblies

Assembly	Assembly Unit	Designation	NCBI Accession number	IMGT allele name	Fct	IMGT label	Positions in NCBI Accession number	Orientation
GRCh38.p14	Primary Assembly	Full chromosome 2	NC_000002.12	IGKJ4*01	F	J-GENE-UNIT	88860886..88860962	REV
						J-REGION	88860886..88860923	REV

Number of alleles: 2

IMGT reference alleles

IMGT allele names for IGKJ4	IMGT gene functionality	R	T	Pr	Isolate	Clone name	Accession numbers	Molecule type
IGKJ4*01	F	+	+		-	J4	J00242	gDNA
IGKJ4*02	(F)	+	+		-	J4	AF103571	cDNA

		IMGT/GENE-DB reference sequences (in FASTA format)
IMGT allele names for IGKJ4	IMGT gene functionality	J-REGION
		F+ORF+all P	F+ORF+in-frame P
IGKJ4*01	F	nucleotides	amino acids
IGKJ4*02	(F)

Other sequences from the literature (compiled in IMGT Gene tables, IMGT Repertoire)

IMGT allele names for IGKJ4	R	T	Pr	Isolate	Clone name	Accession numbers	Molecule type
IGKJ4*01	+	+		-		D90159	gDNA
IGKJ4*01	+	+		-		X61584	gDNA
IGKJ4*01	+	+		-		X67858	gDNA
IGKJ4*02	+	+		-		AF189008	gDNA

IMGT Repertoire links

Locus and genes	Proteins and alleles	Genes and clinical entities
Chromosomal localization Gene table Locus representation	Table of alleles Protein Displays Alignment of alleles	Translocations and inversions Translocations and inversions

Annotated IMGT/LIGM-DB cDNA sequences for Homo sapiens IGKJ4: 786

Table of annotated IMGT/LIGM-DB cDNA sequences (Accession number, IMGT allele name, Sequence length, Sequence functionality, Sequence definition, Specificity)

Annotated IMGT/LIGM-DB rearranged genomic DNA sequences for Homo sapiens IGKJ4: 125

Table of annotated IMGT/LIGM-DB rearranged genomic DNA sequences (Accession number, IMGT allele name, Sequence length, Sequence functionality, Sequence definition, Specificity)

Annotated IMGT/3Dstructure-DB structures and IMGT/2Dstructure-DB amino acid sequences for Homo sapiens IGKJ4: 926

Table of annotated IMGT/3Dstructure-DB structures and IMGT/2Dstructure-DB amino acid sequences (IMGT entry ID, IMGT entry type, IMGT allele name, IMGT protein name, IMGT receptor type, IMGT receptor description, Species, Chain ID)

External links

Nomenclature
HGNC database: 5722

Genome databases
NCBI Gene: 28947
Ensembl: ENSG00000211594
GeneCards: IGKJ4
GenAtlas: 27547

Sequence databases
EMBL: AF103571 AF189008 D90159 J00242 X61584 X67858
DDBJ: AF103571 AF189008 D90159 J00242 X61584 X67858
GenBank: AF103571 AF189008 D90159 J00242 X61584 X67858

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Created: 2001-06-15
Last Modified: 2015-03-12