Citing IMGT/GENE-DB: Giudicelli V., Chaume D. and Lefranc M.-P.. Nucleic Acids Res., 33: D256 - D261 (2005). PMID: 15608191

IMGT/GENE-DB program version: 3.1.38 (08 November 2022)
IMGT/GENE-DB data updates

IMGT/GENE-DB DETAILED RESULTS

Selected genes: Homo sapiens IGKJ1

---

IMGT gene name and definition

IMGT gene name:	Homo sapiens IGKJ1
IMGT gene definition:	Homo sapiens immunoglobulin kappa joining 1

Chromosomal localization

Locus name:	Homo sapiens IGK locus
Chromosome:	2
Chromosomal localization:	2p11.2

Localizations in genome assemblies

Assembly	Assembly Unit	Designation	NCBI Accession number	IMGT allele name	Fct	IMGT label	Positions in NCBI Accession number	Orientation
GRCh38.p14	Primary Assembly	Full chromosome 2	NC_000002.12	IGKJ1*01	F	J-GENE-UNIT	88861886..88861962	REV
						J-REGION	88861886..88861923	REV

Number of alleles: 1

IMGT reference alleles

IMGT allele names for IGKJ1	IMGT gene functionality	R	T	Pr	Isolate	Clone name	Accession numbers	Molecule type
IGKJ1*01	F	+	+		-	J1	J00242	gDNA

		IMGT/GENE-DB reference sequences (in FASTA format)
IMGT allele names for IGKJ1	IMGT gene functionality	J-REGION
		F+ORF+all P	F+ORF+in-frame P
IGKJ1*01	F	nucleotides	amino acids

Other sequences from the literature (compiled in IMGT Gene tables, IMGT Repertoire)

IMGT allele names for IGKJ1	R	T	Pr	Isolate	Clone name	Accession numbers	Molecule type
IGKJ1*01	+	+		-		X61584	gDNA
IGKJ1*01	+	+		-		X67858	gDNA

IMGT Repertoire links

Locus and genes	Proteins and alleles	Genes and clinical entities
Chromosomal localization Gene table Locus representation	Table of alleles Protein Displays Alignment of alleles	Translocations and inversions Translocations and inversions

Annotated IMGT/LIGM-DB cDNA sequences for Homo sapiens IGKJ1: 900

Table of annotated IMGT/LIGM-DB cDNA sequences (Accession number, IMGT allele name, Sequence length, Sequence functionality, Sequence definition, Specificity)

Annotated IMGT/LIGM-DB rearranged genomic DNA sequences for Homo sapiens IGKJ1: 178

Table of annotated IMGT/LIGM-DB rearranged genomic DNA sequences (Accession number, IMGT allele name, Sequence length, Sequence functionality, Sequence definition, Specificity)

Annotated IMGT/3Dstructure-DB structures and IMGT/2Dstructure-DB amino acid sequences for Homo sapiens IGKJ1: 1702

Table of annotated IMGT/3Dstructure-DB structures and IMGT/2Dstructure-DB amino acid sequences (IMGT entry ID, IMGT entry type, IMGT allele name, IMGT protein name, IMGT receptor type, IMGT receptor description, Species, Chain ID)

External links

Nomenclature
HGNC database: 5719

Genome databases
NCBI Gene: 28950
Ensembl: ENSG00000211597
GeneCards: IGKJ1
GenAtlas: 27544

Protein database
UniProt: A0A0A0MT89

Sequence databases
EMBL: J00242 X61584 X67858
DDBJ: J00242 X61584 X67858
GenBank: J00242 X61584 X67858

---

Created: 2001-06-15
Last Modified: 2017-03-15