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Database contains
247103 sequences
from 361 species

IMGT/LIGM-DB sequence

Version:
1.2.9
Database release:
LIGMDB_V12
Citing IMGT/LIGM-DB:
Giudicelli, V., Duroux P., Ginestoux C., Folch G., Jabado-Michaloud J., Chaume D., Lefranc M.-P., Nucleic Acids Res., 34:D781-D784 (2006). PMID:16381979 Abstract Full PDF

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AF189007 - Annotation

Sections
Accession number AF189007
Sequence version 1
Secondary accession numbers
IMGT annotation level by annotators
Definition Homo sapiens immunoglobulin kappa light chain JK2 (Jk2) gene, Jk2c allele, partial cds.
Species Homo sapiens (human)
Taxonomy cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens
Sequence length 167
IMGT/LIGM-DB dates 26-JUN-2000
  15-JAN-2013 (v. 9)

OBTENTION

Specificities
Disease related

IDENTIFICATION

Molecule type gDNA
Configuration type germline
Gene type joining
Molecule entity type J-gene
Functionality type
Chain type IG-Light, IG-Light-Kappa-IGK
Structure type regular
Location type
Other keywords antigen receptor, Immunoglobulin superfamily (IgSF), immunoglobulin (IG)

CLASSIFICATION

IMGT Groups
IMGT Subgroups

DESCRIPTION

J-GENE   1..>167
  db_xref taxon:9606
  IMGT_allele IGKJ2*04
  IMGT_gene IGKJ2
  mol_type genomic DNA
  organism Homo sapiens
5'UTR   1..143
J-RS   112..150
J-NONAMER   112..120
J-SPACER   121..143
J-HEPTAMER   144..150
J-REGION   151..>167
  IMGT_allele IGKJ2*04
  IMGT_gene IGKJ2
  protein_id AAF25191.1
tgtgcagttttggccag C A V L A
V Q F W P
C S F G Q
J-PHE   159..161

Literature references

[1] 1-167
Feeney A.J.
New alleles of human immunoglobulin kappa J segments IGKJ2 and IGKJ4
Immunogenetics 51(6):487-488 (2000)
DOI: 10.1007/s002510050647
PUBMED: 10866115
[2] 1-167
Feeney A.J.
Submitted to the ENA/GenBank/DDBJ databases (22-SEP-1999)
Immunology, The Scripps Research Institute, 10550 North Torrey Pines Rd., La Jolla, CA 92037, USA

Database cross-references

Database Identifiers Relation
ENA AF189007

Sequence

Length : 167 BP
Composition : 50 A; 22 C; 48 G; 47 T; 0 other

     aagcaagatt cagtcattgg gtgagaataa cttgtctaag taatagcttc agaaatgtcc        60
     tggggaacat aacatgttct ggacagagcc ttggtcaatt gtcagaaagg gagtttttgt       120
     ataggaggga agttaagagg aaccattgtg tgtgcagttt tggccag                     167
Created:
23/07/1995
Database development:
Denys CHAUME, Patrice DUROUX, Nelly JOUFFRE
Database scientific officer:
Marie-Paule Lefranc