IMGT/LIGM-DB logo
Database contains
247103 sequences
from 361 species

IMGT/LIGM-DB sequence

Version:
1.2.9
Database release:
LIGMDB_V12
Citing IMGT/LIGM-DB:
Giudicelli, V., Duroux P., Ginestoux C., Folch G., Jabado-Michaloud J., Chaume D., Lefranc M.-P., Nucleic Acids Res., 34:D781-D784 (2006). PMID:16381979 Abstract Full PDF

Views

AF189008 - Annotation

Sections
Accession number AF189008
Sequence version 1
Secondary accession numbers
IMGT annotation level by annotators
Definition Homo sapiens immunoglobulin kappa light chain JK4 (Jk4) gene, Jk4b allele, partial cds.
Species Homo sapiens (human)
Taxonomy cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens
Sequence length 169
IMGT/LIGM-DB dates 26-JUN-2000
  15-JAN-2013 (v. 9)

OBTENTION

Specificities
Disease related

IDENTIFICATION

Molecule type gDNA
Configuration type germline
Gene type joining
Molecule entity type J-gene
Functionality type
Chain type IG-Light, IG-Light-Kappa-IGK
Structure type regular
Location type
Other keywords antigen receptor, Immunoglobulin superfamily (IgSF), immunoglobulin (IG)

CLASSIFICATION

IMGT Groups
IMGT Subgroups

DESCRIPTION

J-GENE   1..>169
  db_xref taxon:9606
  IMGT_allele IGKJ4*02
  IMGT_gene IGKJ4
  mol_type genomic DNA
  organism Homo sapiens
5'UTR   1..153
J-RS   115..153
J-NONAMER   115..123
J-SPACER   124..146
J-HEPTAMER   147..153
J-REGION   154..>169
  IMGT_allele IGKJ4*02
  IMGT_gene IGKJ4
  protein_id AAF25192.1
gctcacgttcggcgga A H V R R
L T F G G
S R S A
J-PHE   161..163

Literature references

[1] 1-169
Feeney A.J.
New alleles of human immunoglobulin kappa J segments IGKJ2 and IGKJ4
Immunogenetics 51(6):487-488 (2000)
DOI: 10.1007/s002510050647
PUBMED: 10866115
[2] 1-169
Feeney A.J.
Submitted to the ENA/GenBank/DDBJ databases (22-SEP-1999)
Immunology, The Scripps Research Institute, 10550 North Torrey Pines Rd., La Jolla, CA 92037, USA

Database cross-references

Database Identifiers Relation
ENA AF189008

Sequence

Length : 169 BP
Composition : 47 A; 24 C; 53 G; 45 T; 0 other

     atagacgaat cattgggttt gagaggagaa taggattcat gggggaaatg gggaagaaat        60
     agctagattt ttctctgaac aagcagccta tctcatatga ttggcttcaa gagaggtttt       120
     tgttgagggg aaagggtgag atccctcact gtggctcacg ttcggcgga                   169
Created:
23/07/1995
Database development:
Denys CHAUME, Patrice DUROUX, Nelly JOUFFRE
Database scientific officer:
Marie-Paule Lefranc