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Database contains
247103 sequences
from 361 species

IMGT/LIGM-DB sequence

Version:
1.2.9
Database release:
LIGMDB_V12
Citing IMGT/LIGM-DB:
Giudicelli, V., Duroux P., Ginestoux C., Folch G., Jabado-Michaloud J., Chaume D., Lefranc M.-P., Nucleic Acids Res., 34:D781-D784 (2006). PMID:16381979 Abstract Full PDF

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AF540881 - Annotation

Sections

Accession number AF540881
Sequence version 1
Secondary accession numbers
IMGT annotation level keyword level
Definition Ovis aries T-cell receptor Vgamma6 gene, partial cds.
Species Ovis aries (sheep)
Taxonomy Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Ovis; Ovis aries
Sequence length 1194
IMGT/LIGM-DB dates 14-NOV-2002
  15-JAN-2013 (v. 3)

OBTENTION

Specificities
Disease related

IDENTIFICATION

Molecule type gDNA
Configuration type undefined, rearranged
Gene type constant, variable, joining
Molecule entity type
Functionality type
Chain type TR-Gamma-TRG
Structure type regular
Location type
Other keywords antigen receptor, Immunoglobulin superfamily (IgSF), T cell receptor (TR), IMGT reference sequence

CLASSIFICATION

IMGT Groups TRGV
IMGT Subgroups

DESCRIPTION

Literature references

[1] 1-95092
Miccoli M.C., Lipsi M.R., Massari S., Lanave C., Ciccarese S.
Exon-intron organization of TRGC genes in sheep
Immunogenetics 53(5):416-422 (2001)
DOI: 10.1007/s002510100340
PUBMED: 11486279
[2] 1-95092
Miccoli M.C., Antonacci R., Vaccarelli G., Lanave C., Massari S., Cribiu E.P., Ciccarese S.
Evolution of TRG clusters in cattle and sheep genomes as drawn from the structural analysis of the ovine TRG2@ locus
J. Mol. Evol. 57(1):52-62 (2003)
DOI: 10.1007/s00239-002-2451-9
PUBMED: 12962306
[3] 1-95092
Vaccarelli G., Miccoli M.C., Lanave C., Massari S., Cribiu E.P., Ciccarese S.
Genomic organization of the sheep TRG1@ locus and comparative analyses of Bovidae and human variable genes
Gene 357(2):103-114 (2005)
DOI: 10.1016/j.gene.2005.05.033
PUBMED: 16125878
[4] 1-95092
Vaccarelli G., Miccoli M.C., Antonacci R., Pesole G., Ciccarese S.
Joining-constant blocks as markers of TRG loci evolution in Bovidae: putative role for enhancer-like sequences in driving coordinated recombinational unit duplications
Unpublished
[5] 1-95092
Miccoli M.C., Lipsi M.R., Massari S., Fiorentino F., Lanave C., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (03-MAR-2000)
Institute of Genetics, University of Bari, via Amendola 165/a, Bari, BA 70126, Italy
[6] 1-95092
Miccoli M.C., Lipsi M.R., Massari S., Fiorentino F., Lanave C., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (12-OCT-2000)
Institute of Genetics-DAPEG, University of Bari, via Amendola 165/a, Bari, Ba 70126, Italy
[7] 1-95092
Miccoli M.C., Vaccarelli G., Antonacci R., Lanave C., Lanave C., Massari S., Cribiu E.P., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (24-JUL-2002)
Dipartimento di Anatomia Patologica e di Genetica, University of Bari, via Amendola 165/a, Bari, Ba 70126, Italy
[8] 1-95092
Miccoli M.C., Vaccarelli G., Antonacci R., Lanave C., Massari S., Cribiu E.P., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (23-AUG-2002)
Dipartimento di Anatomia Patologica e di Genetica, University of Bari, via Amendola 165/a, Bari, Ba 70126, Italy
[9] 1-95092
Vaccarelli G., Miccoli M.C., Lanave C., Pagliarulo D., Cribiu E., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (25-JUL-2003)
Dipartimento di Anatomia Patologica e di Genetica, University of Bari, via Amendola 165/a, Bari, Ba 70126, Italy
[10] 1-95092
Antonacci R., Vaccarelli G., Cribiu P.E., Iannuzzi L., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (07-NOV-2005)
Dipartimento di Genetica e Microbiologia, University of Bari, via Amendola 165/a, Bari, Ba 70126, Italy
[11] 1-95092
Vaccarelli G., Miccoli M.C., Antonacci R., Pesole G., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (11-SEP-2006)
Dipartimento di Genetica e Microbiologia, University of Bari, via Amendola 165/a, Bari, Ba 70126, Italy

Database cross-references

Database Identifiers Relation
ENA AF540881
REMTREMBL AAN62837

Sequence

Length : 1194 BP
Composition : 287 A; 339 C; 278 G; 290 T; 0 other

     gtggacaaaa attcggtaaa taaactatat gggaaaagaa tctggaaaaa ggaatatata        60
     tatatatata tatatatata tatatatata tatatgtcac tttgctgtac agctgaaact       120
     aacccaagac atttttaaat ggacttatac tataaaataa gtttaaaaca aaatggaaat       180
     aaaatagccc cagctttccc catttctaaa ccgaagatat tatttatccc acaaggtttc       240
     agaatttaat aaaacaatga acataaatca gttagcacac tgccaaaata tatttgatgc       300
     ccagtcaccg atctctatat tcctatttca ttattccacc aatattcgtt agtgttcctc       360
     agaacattct cgtttatcat tcctcccctc accctgtggt cagactcttg tctcctccct       420
     ctggctcctc cctcctccac ccctccctta tttctctcac cagttccccc ggggagcctg       480
     ggagaagcac cactcagacc ctgacctgac ctccatcaca cgcccaggtg tggagcctca       540
     gggcaacttg agccccacca ccatgggctc ttccctcggg gcagagggca gagccgtgct       600
     gggccgcctg accctcctct gggccctcgt ggttccaggt gagtccccgc ggcttccccg       660
     gtgggccgag cgggatgacc cggaggctgc ggactcaacc tgccctcatc tcctcccttg       720
     caggtatcca gcaggagatc aggctgtcac agcggtccgt gatggtgggg tccgcgggtg       780
     gagctatgac tatgccttgc agtgtcagta agtctgtgga ttacgtccac tggttccgcc       840
     agctggaggg ccaggcccct gagaggcttc tctatctagc cttgtccaag cgggatgtgc       900
     agtgggattc agtcctagga ggtgataaag tcagcgcagc ccgcggcggg gatggcaaga       960
     gctgcaccat gtccttgagg aagctggcga agagcgacga gggactgtac tactgtgctg      1020
     cctggggatc ggcacagcag tgtgcgcagc cccgggatct gcacaaaaag cactgagacc      1080
     cactgctcgc ccagacctgg caactgccac cgcctccggt ccttaggttg ccctcggggt      1140
     gatcctctac agtatatcct gatgactccc cctactctag gcttcttgca aata            1194
Created:
23/07/1995
Database development:
Denys CHAUME, Patrice DUROUX, Nelly JOUFFRE
Database scientific officer:
Marie-Paule Lefranc