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Database contains
247103 sequences
from 361 species

IMGT/LIGM-DB sequence

Version:
1.2.9
Database release:
LIGMDB_V12
Citing IMGT/LIGM-DB:
Giudicelli, V., Duroux P., Ginestoux C., Folch G., Jabado-Michaloud J., Chaume D., Lefranc M.-P., Nucleic Acids Res., 34:D781-D784 (2006). PMID:16381979 Abstract Full PDF

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AY348328 - Annotation

Sections
Accession number AY348328
Sequence version 1
Secondary accession numbers
IMGT annotation level keyword level
Definition Ovis aries T cell receptor Vgamma3.2 gene, partial cds.
Species Ovis aries (sheep)
Taxonomy Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Ovis; Ovis aries
Sequence length 4103
IMGT/LIGM-DB dates 19-AUG-2004
  16-JAN-2013 (v. 3)

OBTENTION

Specificities
Disease related

IDENTIFICATION

Molecule type gDNA
Configuration type
Gene type variable
Molecule entity type
Functionality type
Chain type TR-Gamma-TRG
Structure type regular
Location type
Other keywords antigen receptor, Immunoglobulin superfamily (IgSF), T cell receptor (TR), IMGT reference sequence

CLASSIFICATION

IMGT Groups
IMGT Subgroups

DESCRIPTION

Literature references

[1] 1-158873
Miccoli M.C., Lipsi M.R., Massari S., Lanave C., Ciccarese S.
Exon-intron organization of TRGC genes in sheep
Immunogenetics 53(5):416-422 (2001)
DOI: 10.1007/s002510100340
PUBMED: 11486279
[2] 1-158873
Miccoli M.C., Antonacci R., Vaccarelli G., Lanave C., Massari S., Cribiu E.P., Ciccarese S.
Evolution of TRG clusters in cattle and sheep genomes as drawn from the structural analysis of the ovine TRG2@ locus
J. Mol. Evol. 57(1):52-62 (2003)
DOI: 10.1007/s00239-002-2451-9
PUBMED: 12962306
[3] 1-158873
Vaccarelli G., Miccoli M.C., Lanave C., Massari S., Cribiu E.P., Ciccarese S.
Genomic organization of the sheep TRG1@ locus and comparative analyses of Bovidae and human variable genes
Gene 357(2):103-114 (2005)
DOI: 10.1016/j.gene.2005.05.033
PUBMED: 16125878
[4] 1-158873
Vaccarelli G., Miccoli M.C., Antonacci R., Pesole G., Ciccarese S.
Joining-constant blocks as markers of TRG loci evolution in Bovidae: putative role for enhancer-like sequences in driving coordinated recombinational unit duplications
Unpublished
[5] 1-158873
Massari S., Lipsi M.R., Antonacci R., Vonghia G., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (05-FEB-1998)
Institute of Genetics, University of Bari, via Amendola 165/A, Bari, BA 70126, Italy
[6] 1-158873
Miccoli M.C., Lipsi M.R., Massari S., Fiorentino F., Lanave C., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (16-FEB-2000)
Institute of Genetics, University of Bari, via Amendola 165/a, Bari, Ba 70126, Italy
[7] 1-158873
Miccoli M.C., Vaccarelli G., Antonacci R., Lanave C., Massari S., Cribiu E.P., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (04-SEP-2002)
Dipartimento di Anatomia Patologica e di Genetica, University of Bari, via Amendola 165/a, Bari, Ba 70126, Italy
[8] 1-158873
Miccoli M.C., Vaccarelli G., Antonacci R., Lanave C., Massari S., Cribiu E.P., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (19-SEP-2002)
Dipartimento di Anatomia Patologica e di Genetica, University of Bari, via Amendola 165/a, Bari, Ba 70126, Italy
[9] 1-158873
Vaccarelli G., Miccoli M.C., Lanave C., Pagliarulo D., Cribiu E., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (23-JUL-2003)
Dipartimento di Anatomia Patologica e di Genetica, University of Bari, via Amendola 165/a, Bari, Ba 70126, Italy
[10] 1-158873
Vaccarelli G., Miccoli M.C., Lanave C., Pagliarulo D., Cribiu E., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (25-JUL-2003)
Dipartimento di Anatomia Patologica e di Genetica, University of Bari, via Amendola 165/a, Bari, Ba 70126, Italy
[11] 1-158873
Vaccarelli G., Miccoli M.C., Antonacci R., Pesole G., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (11-SEP-2006)
Dipartimento di Genetica e Microbiologia, University of Bari, via Amendola 165/a, Bari, Ba 70126, Italy

Database cross-references

Database Identifiers Relation
ENA AY348328

Sequence

Length : 4103 BP
Composition : 1214 A; 853 C; 881 G; 1155 T; 0 other

     gatatctata tatttgcaag gaagaaatct agaaattaag acactgtatg ataagacttg        60
     ttagtcttgg tagtatgatc acaggcattt ttattttcac ctttatccta tttgtctgaa       120
     tctcctcaat aagcatcttt cccagcacat cccacttaag agctgggtga attttgttga       180
     ttcacgtcac tgcacgcttt tcctgagaaa aaccccatct tcctgatcta ttaaatcaga       240
     acgaccaaca tcaatatcaa tatcatggga tggctgtaag atgaaaaaca tttagaaaaa       300
     tagcctaaca aatagaaagt gcttgttaat atttgctacc ataaaagtca atgtttatta       360
     aacatgcaat atttgaaaat actatgttaa ggaaaagtgt tcatgaacta gctcctgggc       420
     aaatagaaat cattttcatt ctacagaaat caagactcct ccatggctcc ttcacattca       480
     tgccaaataa ccttccagtg agcactagct tcatttttga gatcggcagg accagtggga       540
     aaaccagagg aaacaggaga ctcaggccct atgagcccaa cgacccgcta gaccatccac       600
     ttccttccct tcttggttca ggccacaccc ttccactgat ttgaggcatc tagccaccag       660
     gtccccccac cttccagcct tctgtttgag cacacagctc agcagacagg atgtcaccac       720
     tggaagcgtt cacatttttc tccttctggg cttgtgagtc actccctgac cctttcacct       780
     tagatgaatg agcaaagaaa ttcctggata ttccttacgt tatcagaagt tcatcagaaa       840
     ttcgcttctt ttacttgcag ctggacttgg gttatcaaaa gtggagcagg cccaaatctc       900
     cctttccaca gaagtaaaga aaagtattga catacattgc aagatagaga gcacagattt       960
     cgaatcagaa actgtttact ggtaccggca gaaaaggaat caggctttgg agcatctggt      1020
     ttatgtgatc tcaaccacaa ctgcagctcg aaatcaagta gacgggaaga acaaaattga      1080
     ggcaagaaaa gatgctcaaa tgttcgcttc gacccttatg gtaaattttg tagaaaaaga      1140
     agatgtgggc atttactact gtgctggctg ggatgtatag aactgtggag acaatccaca      1200
     caagatcccc tccccggatc tgtgcccacc cacatccttc ccaccagcag caatcagttt      1260
     cacagggctc cctggctcac ccccacctca tctgcagcac ttcctgagct ttccaggaag      1320
     tcatcttgga tcatgcacat gatcttccag cagacaccaa aagctgtgct tccaaagctt      1380
     tttgctttta cactgtattt cactgaattg aaatcttgtc tgagggcaca caggctgtgc      1440
     taccgttcat catctcccaa tccagagact tctgtatgtg ggcaagcttc aggttgaaag      1500
     agggtattac catgtgccat tattacgaca tatacttaaa acagaaatgc tgtagtgtaa      1560
     gtgtaattaa tctgtttcac aactagaatg aaagtgtaga gaatttaacc gtaatgatta      1620
     gcctaagaaa agaagtccat gttgatgatc tggactatga gatcacactg aaatgttcaa      1680
     gaactgcaat tctttaagtg aacactagga cactggggta gatgagggat gaaaaaagtg      1740
     cacctttttg ggggacgtga ggaaaatgat tctgccatca agatgtcatc agaatagagc      1800
     tctggatcat tggggtggtt ggatgagccc acccatcctt ggttacctgg attctgcttt      1860
     gtggaagaat agaaagtgtg acttccctgc tggccctgta tttagaactc actcttccac      1920
     tgcagggggc atagtttgat ctctggttgg taatggagat ccctcaattg gcttatggtg      1980
     aggcaccccc aggaaaagaa gagagagtat ttgccaagaa caaaagagct aactttgggt      2040
     ttggtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgctgtgt gaatgaattc      2100
     tctatcagtg ttttcaatgc tttccatata ttagatcctt tacgctgcac tatttatagt      2160
     tttttttttc tcttatcact agacagattt gaatcatgag gaaaatgaaa taccaggtag      2220
     tacagtcact tgttggcaaa agtccgacaa aggtccatct agtcaaggct atggtttttc      2280
     cagtggtcat gtatggatgt gagttggact ataaagaaag ctgagcgcta aagaattgat      2340
     gcttttgaac tgtgatgcag gagaagactc tggagagtcc cttggactgc aaggagattc      2400
     aaccagtcaa tcctaaagga aatcagtcct gactattcac tagaaggact gatgctgaag      2460
     ctgaaactcc aatactttgg ctacctgatg tgaagaactt cttggaaaag accttgatgc      2520
     tgagaaagat tgaaggcaga aggagaaggg gacgacagag gatgagatag ttggatggca      2580
     tcaccgactc gatggacgtg cgtttaagca tgctctggga gttggtgatg gacagggaag      2640
     cccggcatgc tgcagtccat agggttgcaa agagttgaac atgactgagt gactgcactt      2700
     aactgagttc agtccttacc acaaatttca tagaaaaaga tgtggtcatt aagcactatg      2760
     ctgttgggac ccgcagcact aaagatgcca acacagagca acaactgcct cttctgggac      2820
     tctgccccat catagccttc ccacaggagc aaagtcagct acttcctgct tgggcttcca      2880
     gcctctggct caccatctct gctgccttca tgagaattcc aagagaaaac cttggcttgt      2940
     gttcatgtat caggactcac cttgagcagc aagcatttct gaccatgatg ttctcaaatc      3000
     tttcctaatg aactaaagtc tcgtctgtga atgactggac atgggcttta tttattatgt      3060
     caccatccag agttttccac taactgtgaa tagttcaggc tgaagaaagg aatcattgtg      3120
     tattgggatt gctaggcatg gtacatatat attaccacac ataattatca cagctctcct      3180
     gcctggtaat cattatctgt ccattttaca gataaagaag tgaaagctta gacagttaaa      3240
     atgattggcc agagataaga agtctgtgct tttttaactg gactgcaagg ctatcctgaa      3300
     aatttaaaga tcataattct atataacaaa caaaacactt gaggtaaatt tgggatggag      3360
     caagtgtctt tttctgcggg aggaggaaga tggttcctcc tctcacaggc agggatgtgc      3420
     cagcatgatg tcatcagagt agagggctga gccactggag ccaacagatg aaccctccat      3480
     attgtgagta ggaagaaagc tacctcgtat ctgcctataa agaaagagag aagatggacc      3540
     aagagaagaa cagctaataa ttttgtgaga gagagaattc tttattagtg ttctcaattt      3600
     tttgcacata tatatgaagc cccttaaccc tcatgacaac acgtgagact tctgttatta      3660
     ttataaagcc cattgactca tgaggaaaat gagaccctat gtgtctcaga aacttgttca      3720
     agtcacacag ctggtacttg gcagaatagg gttagattca gggtatgtag ctctggagtc      3780
     tgtcttcctc attctaagga gataaaaaga cgtgccatgt gtcattccta cctccatgga      3840
     gaaaacaaaa ctcacctttg tggatcattc actggcacaa tttactgttt tatgctgaat      3900
     ctggtgagca gcatttgaat cattagcagt cttcaaagaa tacatgaaat accaatgtta      3960
     tcattttatt tttcgaagta tttgaaaaca ataaaaattc tattgttttg ttatgccatc      4020
     tctcaaatca ttgtgaaaca aaggaggact actttgcaat ccacacttct tgtacagcac      4080
     ataccaggca ccccgtggat atc                                              4103
Created:
23/07/1995
Database development:
Denys CHAUME, Patrice DUROUX, Nelly JOUFFRE
Database scientific officer:
Marie-Paule Lefranc