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Database contains
247103 sequences
from 361 species

IMGT/LIGM-DB sequence

Version:
1.2.9
Database release:
LIGMDB_V12
Citing IMGT/LIGM-DB:
Giudicelli, V., Duroux P., Ginestoux C., Folch G., Jabado-Michaloud J., Chaume D., Lefranc M.-P., Nucleic Acids Res., 34:D781-D784 (2006). PMID:16381979 Abstract Full PDF

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AY348329 - Annotation

Sections

Accession number AY348329
Sequence version 1
Secondary accession numbers
IMGT annotation level keyword level
Definition Ovis aries T cell receptor Vgamma2.3 gene, partial cds.
Species Ovis aries (sheep)
Taxonomy Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Ovis; Ovis aries
Sequence length 1918
IMGT/LIGM-DB dates 19-AUG-2004
  16-JAN-2013 (v. 3)

OBTENTION

Specificities
Disease related

IDENTIFICATION

Molecule type gDNA
Configuration type
Gene type variable
Molecule entity type
Functionality type
Chain type TR-Gamma-TRG
Structure type regular
Location type
Other keywords antigen receptor, Immunoglobulin superfamily (IgSF), T cell receptor (TR), IMGT reference sequence

CLASSIFICATION

IMGT Groups
IMGT Subgroups

DESCRIPTION

Literature references

[1] 1-158873
Miccoli M.C., Lipsi M.R., Massari S., Lanave C., Ciccarese S.
Exon-intron organization of TRGC genes in sheep
Immunogenetics 53(5):416-422 (2001)
DOI: 10.1007/s002510100340
PUBMED: 11486279
[2] 1-158873
Miccoli M.C., Antonacci R., Vaccarelli G., Lanave C., Massari S., Cribiu E.P., Ciccarese S.
Evolution of TRG clusters in cattle and sheep genomes as drawn from the structural analysis of the ovine TRG2@ locus
J. Mol. Evol. 57(1):52-62 (2003)
DOI: 10.1007/s00239-002-2451-9
PUBMED: 12962306
[3] 1-158873
Vaccarelli G., Miccoli M.C., Lanave C., Massari S., Cribiu E.P., Ciccarese S.
Genomic organization of the sheep TRG1@ locus and comparative analyses of Bovidae and human variable genes
Gene 357(2):103-114 (2005)
DOI: 10.1016/j.gene.2005.05.033
PUBMED: 16125878
[4] 1-158873
Vaccarelli G., Miccoli M.C., Antonacci R., Pesole G., Ciccarese S.
Joining-constant blocks as markers of TRG loci evolution in Bovidae: putative role for enhancer-like sequences in driving coordinated recombinational unit duplications
Unpublished
[5] 1-158873
Massari S., Lipsi M.R., Antonacci R., Vonghia G., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (05-FEB-1998)
Institute of Genetics, University of Bari, via Amendola 165/A, Bari, BA 70126, Italy
[6] 1-158873
Miccoli M.C., Lipsi M.R., Massari S., Fiorentino F., Lanave C., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (16-FEB-2000)
Institute of Genetics, University of Bari, via Amendola 165/a, Bari, Ba 70126, Italy
[7] 1-158873
Miccoli M.C., Vaccarelli G., Antonacci R., Lanave C., Massari S., Cribiu E.P., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (04-SEP-2002)
Dipartimento di Anatomia Patologica e di Genetica, University of Bari, via Amendola 165/a, Bari, Ba 70126, Italy
[8] 1-158873
Miccoli M.C., Vaccarelli G., Antonacci R., Lanave C., Massari S., Cribiu E.P., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (19-SEP-2002)
Dipartimento di Anatomia Patologica e di Genetica, University of Bari, via Amendola 165/a, Bari, Ba 70126, Italy
[9] 1-158873
Vaccarelli G., Miccoli M.C., Lanave C., Pagliarulo D., Cribiu E., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (23-JUL-2003)
Dipartimento di Anatomia Patologica e di Genetica, University of Bari, via Amendola 165/a, Bari, Ba 70126, Italy
[10] 1-158873
Vaccarelli G., Miccoli M.C., Lanave C., Pagliarulo D., Cribiu E., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (25-JUL-2003)
Dipartimento di Anatomia Patologica e di Genetica, University of Bari, via Amendola 165/a, Bari, Ba 70126, Italy
[11] 1-158873
Vaccarelli G., Miccoli M.C., Antonacci R., Pesole G., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (11-SEP-2006)
Dipartimento di Genetica e Microbiologia, University of Bari, via Amendola 165/a, Bari, Ba 70126, Italy

Database cross-references

Database Identifiers Relation
ENA AY348329

Sequence

Length : 1918 BP
Composition : 506 A; 436 C; 418 G; 558 T; 0 other

     gatatccatt ttcctgaatt tcagataaac atcatatttt ttttagtgta agtatatcca        60
     aatgttacat agtactatgt aagacatttt tctccaccaa atctagcaac cttaggtaca       120
     gggcttttac ttgatgatga aaaaatttct cttatttaat tgatttgtaa gcacacacac       180
     ttccacattt aactttgaag agagttaaat gtagatcaac acacctggta tcaatttctt       240
     gtaataaaag aggggtgaat gcttattgga tttgtgggtg gttgcctcaa aatttaccta       300
     cagatgtaaa aaggaaggta gtgcagggaa atgatagaaa ggtggttcct cgagagaaag       360
     accatggcag cgtcattaac actgaaatac tgagctgcag ggaacttagc ctgattcagg       420
     tctgctcact ccaccaggca acaggcaagc tttgtccatg tttcactgtg cacctcctat       480
     ctaatccctc tgcttgcagt tctgagctct cagagctcag gcttttcttc tcctgttggg       540
     gaggtggctg ctcccagcct gccctccaga aaggggttgg tgcaaagagg cagggctcct       600
     ccccaggcct cacccagcac ccaccccttc tgggatcagc ctggtggtct ttaagagaga       660
     tcctcgctga ctcctcggcc tgtcacatct tctgggaaac tcggtctagc tcgctgtccc       720
     aggcatgctg tgggtcccag cactcctgat tttcctggct cctggtaagt gtgttggtgg       780
     atgctccggg gatttttctg taatttttgg cgatggtgag ggggagggtc atactaagaa       840
     atggtgtttc ctctttctca tgattttttg ttgctttccc ccttgcagtc acacaggtat       900
     cttccaacat gggagaggac aagttgtcag tcacgagggc gactgggtca tctgttgtaa       960
     tcgattgtga tcttacacaa aactatatcc actggtacaa attccaggag ggaactgtgc      1020
     cccgacgcct tctctactac gatgtctact actcaaaggt tgtattggac tcaggaatca      1080
     gtgaagggaa ataccacgtt tacaaaggca cagggaagag ctacacgttc gtaatctcaa      1140
     acttgcaaga aagtgattct ggcacgtact actgtgctgt ctgggagaag cacattggtt      1200
     tagacttcct ttacactgca ctggaaattt tgcttgtggc tgccaaaaca gccctgctac      1260
     acagatagat caacccctgt ctcacttcct gcccccaatt ctttttactc tgaatgaaga      1320
     gaaatcctga gctcaatgcc cagccccagt cactgccacc tcccacctcc ccttagtagc      1380
     tgttgtttgt tgtttagcca acagttaaag atttttccta aaagcaagtc tccatcttaa      1440
     ggcttcaggc aagcagctgg taggcagcct attcttttaa cttccttagg agctggtgga      1500
     gtctattcaa ccatctcttg aggacagaca gagcacctcg gattgatcta ttaaggggaa      1560
     tatttaggag aacaaattga aaggttagtt atattgaatc atttatctga tcattttcca      1620
     gagaagatgg ctaggaatga agcatcttca tcattcatga ttatgaaata tgagaaaagc      1680
     tggagtcaaa acttggattc ctgaagccca agctggtatc tgacctatct tttggacaag      1740
     ttgatatttt tctcatataa acaaccaggg cgtgaaatgt aggaaaaggg ggattgatgt      1800
     agctatgcca atcacagtac tctacttaca ccttctgttg aagttcagcc cacagccaga      1860
     actgttctgt attaaacaag caaagccaaa ggttgttttc actctcaccc ccgatatc        1918
Created:
23/07/1995
Database development:
Denys CHAUME, Patrice DUROUX, Nelly JOUFFRE
Database scientific officer:
Marie-Paule Lefranc