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Database contains
247103 sequences
from 361 species

IMGT/LIGM-DB sequence

Version:
1.2.9
Database release:
LIGMDB_V12
Citing IMGT/LIGM-DB:
Giudicelli, V., Duroux P., Ginestoux C., Folch G., Jabado-Michaloud J., Chaume D., Lefranc M.-P., Nucleic Acids Res., 34:D781-D784 (2006). PMID:16381979 Abstract Full PDF

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AY348330 - Annotation

Sections
Accession number AY348330
Sequence version 1
Secondary accession numbers
IMGT annotation level keyword level
Definition Ovis aries T cell receptor Vgamma2.1 gene, partial cds.
Species Ovis aries (sheep)
Taxonomy Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Ovis; Ovis aries
Sequence length 7491
IMGT/LIGM-DB dates 19-AUG-2004
  16-JAN-2013 (v. 3)

OBTENTION

Specificities
Disease related

IDENTIFICATION

Molecule type gDNA
Configuration type
Gene type variable
Molecule entity type
Functionality type
Chain type TR-Gamma-TRG
Structure type regular
Location type
Other keywords antigen receptor, Immunoglobulin superfamily (IgSF), T cell receptor (TR), IMGT reference sequence

CLASSIFICATION

IMGT Groups
IMGT Subgroups

DESCRIPTION

Literature references

[1] 1-158873
Miccoli M.C., Lipsi M.R., Massari S., Lanave C., Ciccarese S.
Exon-intron organization of TRGC genes in sheep
Immunogenetics 53(5):416-422 (2001)
DOI: 10.1007/s002510100340
PUBMED: 11486279
[2] 1-158873
Miccoli M.C., Antonacci R., Vaccarelli G., Lanave C., Massari S., Cribiu E.P., Ciccarese S.
Evolution of TRG clusters in cattle and sheep genomes as drawn from the structural analysis of the ovine TRG2@ locus
J. Mol. Evol. 57(1):52-62 (2003)
DOI: 10.1007/s00239-002-2451-9
PUBMED: 12962306
[3] 1-158873
Vaccarelli G., Miccoli M.C., Lanave C., Massari S., Cribiu E.P., Ciccarese S.
Genomic organization of the sheep TRG1@ locus and comparative analyses of Bovidae and human variable genes
Gene 357(2):103-114 (2005)
DOI: 10.1016/j.gene.2005.05.033
PUBMED: 16125878
[4] 1-158873
Vaccarelli G., Miccoli M.C., Antonacci R., Pesole G., Ciccarese S.
Joining-constant blocks as markers of TRG loci evolution in Bovidae: putative role for enhancer-like sequences in driving coordinated recombinational unit duplications
Unpublished
[5] 1-158873
Massari S., Lipsi M.R., Antonacci R., Vonghia G., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (05-FEB-1998)
Institute of Genetics, University of Bari, via Amendola 165/A, Bari, BA 70126, Italy
[6] 1-158873
Miccoli M.C., Lipsi M.R., Massari S., Fiorentino F., Lanave C., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (16-FEB-2000)
Institute of Genetics, University of Bari, via Amendola 165/a, Bari, Ba 70126, Italy
[7] 1-158873
Miccoli M.C., Vaccarelli G., Antonacci R., Lanave C., Massari S., Cribiu E.P., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (04-SEP-2002)
Dipartimento di Anatomia Patologica e di Genetica, University of Bari, via Amendola 165/a, Bari, Ba 70126, Italy
[8] 1-158873
Miccoli M.C., Vaccarelli G., Antonacci R., Lanave C., Massari S., Cribiu E.P., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (19-SEP-2002)
Dipartimento di Anatomia Patologica e di Genetica, University of Bari, via Amendola 165/a, Bari, Ba 70126, Italy
[9] 1-158873
Vaccarelli G., Miccoli M.C., Lanave C., Pagliarulo D., Cribiu E., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (23-JUL-2003)
Dipartimento di Anatomia Patologica e di Genetica, University of Bari, via Amendola 165/a, Bari, Ba 70126, Italy
[10] 1-158873
Vaccarelli G., Miccoli M.C., Lanave C., Pagliarulo D., Cribiu E., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (25-JUL-2003)
Dipartimento di Anatomia Patologica e di Genetica, University of Bari, via Amendola 165/a, Bari, Ba 70126, Italy
[11] 1-158873
Vaccarelli G., Miccoli M.C., Antonacci R., Pesole G., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (11-SEP-2006)
Dipartimento di Genetica e Microbiologia, University of Bari, via Amendola 165/a, Bari, Ba 70126, Italy

Database cross-references

Database Identifiers Relation
ENA AY348330

Sequence

Length : 7491 BP
Composition : 2186 A; 1600 C; 1619 G; 2086 T; 0 other

     ctcgagtcga gacaaaatat gtggccctgg tcttcgagat ctggaactat gtcttcattg        60
     tgaaaaaaca gtgtattaag tgtaggaggc aagagggaaa cttgcaaatc actgaaagtg       120
     ttgtgcagct gattttacag acagggccct gctgggcagt atctctagca gtttccaacg       180
     tctcagacac ctcctgcccc aacttgcgct gggctgccct ggcctgggag gtgcggatag       240
     gggagggcag tgggggtggg agtgacagcc tgaatggcag ctggaggggc ctgatatgct       300
     gatggagttt cattttctca ggcttctttt gtttacactc cctgcttaat gtgcttgatt       360
     cttggaaaac gctcaaactg gcccctactg gttgaggctg tgcaaggggt agctggggtg       420
     tcacaaggaa atgagaacag ttaaacccca gccaactttg ctcactttca aagggtcaca       480
     gctaatggaa gaaaatattc ctgtacactc gcatgtgatt gttatcaaaa cactctaggc       540
     tatgggtcca ggttccccat tatacacatt aaagttcctc ttatcagctc ctctataagt       600
     tgggaaactt acacgtagga tgttcagatg ctgctcctct gccatgttct ggaccctgaa       660
     ggaaggagca gacagggctt ctttgcagcc ctgaaatcat ccctgacttt ccaccaacca       720
     cctatgctct tccatgatct gtgacttact gaggctgtta cttcttggtt tcgttttctc       780
     agtgtaaaca gggtgacaca agacctgacc cctgaaccaa gctgcatgga caaatgcaaa       840
     gcgctttttt cctcatagga acagaggttc caagggcatg ctctctcacc ggtgcaactg       900
     agtgtcatac actgagtcat gtaaattccc caaaagggac aaaatgacta gaagttaact       960
     tgaacaaggc ttactggggc actaacatca gatgacaatg tgatgggtga atagcagagg      1020
     gctgcacaga cacatgagcc tgaagtgcag atgtcccaac ccctccccac ccagcaggcc      1080
     caggatgggg gtccatgccg tggaatccat ccgtccagtc tcagagcgaa gcagagctcc      1140
     actgctgagg tcatggcttc agctctcatg ttctgacctc agggcacatt caagtcacat      1200
     ccttcactct tcttggtctc tgctctgaga gccaacatct ggggggcctt gccctcctag      1260
     gaggactggc cacatctaac tggtgcagcc agtgtgaggg gtggagtccc ttctcaggtt      1320
     aaagtcacac cctgacgtcc agctcaggcc ctatctgtgg tcgtgctgta ggcgtgggtc      1380
     cactcctgac acaggatgtt ctcattgtga tgacaccact gaattgctga ggttttagtc      1440
     caaggccaga ccctggctct tgccctcccc tattttctcc ctgtaaggag ctcctcctac      1500
     ttagacccca gcctcccagg gagcctccat ctgcacttct gtcctgtggc ccattcttag      1560
     accaaacatg gatggagttg attaggtctg cataaatgac cagtttctac ccaagccaga      1620
     ctatttccat catacagttg gattttactt gaatgatggt gaataatgaa agggaattga      1680
     cagacacact gccttcccat gaagcactgc attgcatatt tctgttttac aaaaacaaat      1740
     cacaatgtaa ctgagttcat ttgaattcaa gttagctaaa cacaagggaa aattatttca      1800
     tagagtgggt tcaaaataag agtactcaga ctgttttagg gaatacatct ataagaaagc      1860
     tattatttca tgatacataa tacaaaatat ctggtacttt ttatatgtat tcactatcca      1920
     tcatgccttc ttgttgtgat tccaagactt taggccaaat atgcaatgca aaacaagaaa      1980
     aacaaaacta atcactttga tatgtttagt tttattattt tttacagttg tacaaacagt      2040
     gaatatgcat gaactaaata acagaagaga aatgtagggc gttaaaaaat accaaagaaa      2100
     tctgagatat gaaacaaaaa ttctattctg caaaccaaaa tatacaaaga gattttactt      2160
     acaaagaaat gctactcaaa cattaggaga tcttttgatt aggaacacag cacaagcctt      2220
     ttctccaact ttacattaaa ggatcagact tagtctctct gaatataggg tggaccatga      2280
     cagtatcata ctagccacag gcaggtgatt aaatgtatgt ggatatggta ccatgtttgt      2340
     gaggcagtta cagttaatta actctttact agccattcaa acatcaaaag tgggtgtcct      2400
     catttcaact ttcaaaaagg aaactcatct tcaagatttt tttttcctct gatgactttc      2460
     aatgaaagtt ttttttctca tgcagaaaag gacagaacac aaaatatgct tgaagtgtaa      2520
     catgaaaagg caaaaatctg tttttataat aaatttcatg taccaaacat aagctgtgac      2580
     atagacaccg tgtagaccgt gattgaggcc acccaaaaat ttgttttaaa gcattttaga      2640
     agaggagcta ctctttatat gcccacattt ttgctttatg tctgaacact gttgagaggt      2700
     tgaaatgtgt tgagaaccag agatgcaggg cagggcttct gtttgctgtg actcggctgc      2760
     ctctgctagg tcacttgctc ctatgccagc tgcccagcta ctgcattcag tccactgctt      2820
     ttcccttctt tcaaaaaatt ttttattatt tttcagtgga gatataattg gtataaaaca      2880
     ttccattagt ctctgtcatg cagcatagtg atttgatatt agtatatatg ctgaaatagt      2940
     caccatatga gtcaacatcc ctcactgtat atagttacag aatatttttt tccttccaag      3000
     acgaagtttt aagatctact ctttcctttt ttggttaaat atttaagcag agttactgct      3060
     tttacaattg actgtatgtt tatttatgag aataaaaggt ttcctttgat gatttgaagg      3120
     gactgaacaa tgtgctccga cctggaggca catggagccc aactgcagtg actgaaccct      3180
     gtctgtcatc tcagaagccc ctgtacactc cagaaacatc catgctgctc aggaccagag      3240
     cagaccctgg taccagatgg ggaacctgag tcctggctct gcccctgtca gccgtggggc      3300
     cctggaccag tcactcaccc tcagtctcac ctgtctccgt gtaagtggag acaaggacag      3360
     taccatcctc ccaggactgc tacccttgct gcctgcagaa gttagggttt atagttaatg      3420
     tctgacacag agatattctg gttcagtcaa caaaatgaat taagtcatct ttatttaggt      3480
     tattgggact ctgaggtatt ttttaatatt cacaaattta tacctctaag aaaaatgttt      3540
     ataaaaatct acattatgaa aggtatggtt atagaatcac aaccacattc tatacatttt      3600
     actttgaaac tactctcagt ggtacacaca atgcagcgtg aatagcactt caaaatcctc      3660
     aaaaactgca gtattcggac ctgcccttca agagcaggta ggaacttaca ttccataact      3720
     aggtcacttc tcggctaaca gaaaaactca gcacttgtca tagtatttaa aaatacttac      3780
     tagagcccat aacctaatat ccaaaatgtg ccaaatacaa tccccaatta ctccacttac      3840
     aggggactca gaaaatctca gcatcttaat atggaaaggt aaattaacaa atgccagtcc      3900
     tgagatattt caggtgttgg attaacagag aaattacagt tgttattgtg cccatgggag      3960
     gaaatgcaaa gagaggtgga gacagagaag taaactccta agagttacaa atggagaaat      4020
     agaaaaggaa agataggtgt tagagacaga taagcagagg gagagaaagt gacagaaatg      4080
     gtgatgagga aggaaactgt aaacagagga gagagaaaga gaaagaggga aagggaggaa      4140
     gtcagatctg gggaaaaaaa aaagagagag agggagagaa ggagccatgg tggggttgca      4200
     ataggagagg gaaagatctg tggacaaaga ggtggacaga gggatgtgaa gagcagtaca      4260
     atgggggaga agaatagtag agagagaaaa agagcaagtc aagagatgga gctgtaaagc      4320
     agtcaggaaa ttaggggcct cgtattggta attatatata catataccac agcaacttta      4380
     ttcatccatt gatgggtact taacttcttt ctaagtctcg gctgttataa acaatgaaca      4440
     taggcgttta gatatatttt agtgtttttg ttttctacag atgaacactc agaagtggaa      4500
     ttgctggatc atgtgggtgt tccacttcta acttatggag gaagctccat actattttcc      4560
     atagcactac atcagtttac attcccacca acagtacaca aagcttctct tttctccaca      4620
     tcttcaatag ttgttatttc cagccttgcg tataatagcc attctgacag ggatggggtg      4680
     atacctcatt gatgctttga tttccctgaa tttcaaataa ataaaaacgg tgttttttag      4740
     tttcagtttg ttcaaaatac cgcgaagctc cttttcttaa aatgaaatct ggaaactata      4800
     tgaggcagca ttttacttga gaatgaacat aaatcctcca tcaaattgat ttataaggca      4860
     tgcacgcaaa cacccatcca tttactttta aggagagtca aatgtagacc aacataactg      4920
     atcttaattt ttataataag gccgattcaa ttcttattag gtttgcgagt tgttgcctca      4980
     gagtttgctt acaggtgtaa aaagaatgag agttcaggga aagaatagaa agacatttaa      5040
     tcaccggaca agaccatggc atcaacacta acactgaaac actgaactga ttggaactta      5100
     gcccagttca gctctgctca ctccagtagg ccacaggcaa gcttgtccac attgctctgc      5160
     ctgcccctcc atctgatccc tctgcttgca gttctgagct ctcagagctc aggcttctct      5220
     tctcctgtgg gggaggtggc tgctctcagc ctgccacagg ggggccctcc agaaaggcgt      5280
     tggtacagag aggtggggct cctccccagg tctcaaccag cccccaccca ctctgggctc      5340
     ggcctggtgg tctttaagag agatatttgc taactgacct gcctgtcact tatactggga      5400
     acctaggtct agctcactgt cccaggcatg atgcgggtcc cagcgctgct tctggttttc      5460
     ctggctcctg gtaagtgtgt tgcctggatg ttggggggat tgttctgtgt tttgtggcaa      5520
     cggtgtatgt gtgttgcggg gtggggggtg gtcatactaa gaaatggtgt ttcctcttcc      5580
     tcattatttt ttgttgcttt tccaatttca gtcatgcagg tgtcttccaa catggaaggg      5640
     gagaagatgt caattactaa ggcagctgtg cctggggcat ttgttgaaat catttgtgat      5700
     cttatcaccc aaaccgtcaa atatatccac tggtacaagc accaggaggg cacagctccc      5760
     cgacgccttc tttactacga catctcctac tcaaagattg tgttggaatc aggaatcagt      5820
     gaagggaagt acaaagttta taaagagaag agctatactt ttgcaatctc aaacctgcaa      5880
     gaaagtgatt ctggaatgta ctactgtgct gtctgggaga agcacgttgg tttagacttc      5940
     ctttacactg cactggaaat tttgcttgtc acggcccagc acagccatgg tatacagtat      6000
     agaccagccg ttgccatgct tactgccccc aattctcttt actctgaagg aagagaaatc      6060
     ctgagttcaa tgcccattcc ccaacattta tattcaatta ctactcaccc ctcctctcag      6120
     aaaccacatt ttttctaaaa ctaggtccct acatttaggc ctcaggcaag cagctgccag      6180
     gcaacatatt cttttagctc ccctaggagc tagtgcggag aaggcaatgg catcacactc      6240
     cactactctt gcctggaaaa tccatggatg gaggagcctg gtaggctgca gtccatgggg      6300
     tcgctaagag tcggacacga ctgaagtgac ttagcagcag cagcagcagt agcagaagct      6360
     aggggagtct atttcacctt ctctttagga caaggatgat agggcaccta ggactgatct      6420
     attcctggag atatttaaga ggatagaatg aaatgattag ctatactgaa ccatttatct      6480
     aatcattatc caaagcagat ggcagggaat gaagcacctt cattattcag gattatgaag      6540
     aatgagaaaa gatggaatga aaacttggac tttctgaacc tcaagctggt atctgactta      6600
     tattttgaac aaacggatat tttccttaca tcaccaacca gggcatggcc gacacagaga      6660
     aagtgtagga aaaaggtgat ttctgtagtt gggttaaccg ttgtattcta cttacacctt      6720
     ctgttcaacc cacagccaga accgttctgt tttaaacaag caaagccaga gattctttcc      6780
     acccagcctc caactttgat atgaccaaat cctaaactgg aatgagactt atcagattat      6840
     atttttctca ataattcaac tgaaaaaaca atttgggtca acaatcagac aatgaatggt      6900
     atctatttca actgaaagtt caattaagaa aggggtgagg ctttcttact gggttaggtt      6960
     taagaacata aattaatact gaagtacaga aataccagat tcatatgtac atgtctcttt      7020
     tgtactggat ccttcaaatt tctatcagaa cagtgtttct taaactgtgg tccatggacc      7080
     acctggcatc agatatatct gaatttgagt aaaagtgcac attctgggtg gcattcaaca      7140
     ccatgaaaac aaatcttgga ctgacagctg gaaatgaggc ttcaataagc tccacatgaa      7200
     agtgaaagtt gcttagtcct gtctgactct ttgcaacccc atggactata caatccatgg      7260
     aattctccag gtcagaatac tggagtgggt agcctttccc ttctccaggg gatcttctca      7320
     acccagggat ccgacccagg tcttccgcat tgcaggcgga ttcttaagct ccatagctta      7380
     ttcttattca agttgattta taagaactgc tgtgctagca gtaacagata aagtgacaca      7440
     tctccctctg aaatgggctg attcccagcc tgacacagga aagcatctag a               7491
Created:
23/07/1995
Database development:
Denys CHAUME, Patrice DUROUX, Nelly JOUFFRE
Database scientific officer:
Marie-Paule Lefranc