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Database contains
247103 sequences
from 361 species

IMGT/LIGM-DB sequence

Version:
1.2.9
Database release:
LIGMDB_V12
Citing IMGT/LIGM-DB:
Giudicelli, V., Duroux P., Ginestoux C., Folch G., Jabado-Michaloud J., Chaume D., Lefranc M.-P., Nucleic Acids Res., 34:D781-D784 (2006). PMID:16381979 Abstract Full PDF

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AY348332 - Annotation

Sections

Accession number AY348332
Sequence version 1
Secondary accession numbers
IMGT annotation level keyword level
Definition Ovis aries T cell receptor Vgamma3.1 gene, partial cds.
Species Ovis aries (sheep)
Taxonomy Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Ovis; Ovis aries
Sequence length 2566
IMGT/LIGM-DB dates 19-AUG-2004
  16-JAN-2013 (v. 3)

OBTENTION

Specificities
Disease related

IDENTIFICATION

Molecule type gDNA
Configuration type
Gene type variable
Molecule entity type
Functionality type
Chain type TR-Gamma-TRG
Structure type regular
Location type
Other keywords antigen receptor, Immunoglobulin superfamily (IgSF), T cell receptor (TR), IMGT reference sequence

CLASSIFICATION

IMGT Groups
IMGT Subgroups

DESCRIPTION

Literature references

[1] 1-158873
Miccoli M.C., Lipsi M.R., Massari S., Lanave C., Ciccarese S.
Exon-intron organization of TRGC genes in sheep
Immunogenetics 53(5):416-422 (2001)
DOI: 10.1007/s002510100340
PUBMED: 11486279
[2] 1-158873
Miccoli M.C., Antonacci R., Vaccarelli G., Lanave C., Massari S., Cribiu E.P., Ciccarese S.
Evolution of TRG clusters in cattle and sheep genomes as drawn from the structural analysis of the ovine TRG2@ locus
J. Mol. Evol. 57(1):52-62 (2003)
DOI: 10.1007/s00239-002-2451-9
PUBMED: 12962306
[3] 1-158873
Vaccarelli G., Miccoli M.C., Lanave C., Massari S., Cribiu E.P., Ciccarese S.
Genomic organization of the sheep TRG1@ locus and comparative analyses of Bovidae and human variable genes
Gene 357(2):103-114 (2005)
DOI: 10.1016/j.gene.2005.05.033
PUBMED: 16125878
[4] 1-158873
Vaccarelli G., Miccoli M.C., Antonacci R., Pesole G., Ciccarese S.
Joining-constant blocks as markers of TRG loci evolution in Bovidae: putative role for enhancer-like sequences in driving coordinated recombinational unit duplications
Unpublished
[5] 1-158873
Massari S., Lipsi M.R., Antonacci R., Vonghia G., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (05-FEB-1998)
Institute of Genetics, University of Bari, via Amendola 165/A, Bari, BA 70126, Italy
[6] 1-158873
Miccoli M.C., Lipsi M.R., Massari S., Fiorentino F., Lanave C., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (16-FEB-2000)
Institute of Genetics, University of Bari, via Amendola 165/a, Bari, Ba 70126, Italy
[7] 1-158873
Miccoli M.C., Vaccarelli G., Antonacci R., Lanave C., Massari S., Cribiu E.P., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (04-SEP-2002)
Dipartimento di Anatomia Patologica e di Genetica, University of Bari, via Amendola 165/a, Bari, Ba 70126, Italy
[8] 1-158873
Miccoli M.C., Vaccarelli G., Antonacci R., Lanave C., Massari S., Cribiu E.P., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (19-SEP-2002)
Dipartimento di Anatomia Patologica e di Genetica, University of Bari, via Amendola 165/a, Bari, Ba 70126, Italy
[9] 1-158873
Vaccarelli G., Miccoli M.C., Lanave C., Pagliarulo D., Cribiu E., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (23-JUL-2003)
Dipartimento di Anatomia Patologica e di Genetica, University of Bari, via Amendola 165/a, Bari, Ba 70126, Italy
[10] 1-158873
Vaccarelli G., Miccoli M.C., Lanave C., Pagliarulo D., Cribiu E., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (25-JUL-2003)
Dipartimento di Anatomia Patologica e di Genetica, University of Bari, via Amendola 165/a, Bari, Ba 70126, Italy
[11] 1-158873
Vaccarelli G., Miccoli M.C., Antonacci R., Pesole G., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (11-SEP-2006)
Dipartimento di Genetica e Microbiologia, University of Bari, via Amendola 165/a, Bari, Ba 70126, Italy

Database cross-references

Database Identifiers Relation
ENA AY348332

Sequence

Length : 2566 BP
Composition : 912 A; 518 C; 469 G; 667 T; 0 other

     gatatcaaaa gttttaaaga caaggaaaag ataaaagagt tcagtgccgc caaatcaact        60
     taaaaaataa taatacagaa acatctctac atagaaaaga agaggccaca actagaaata       120
     tgaagataaa aaaggaagaa tctcattggt aaaggcaaat aatacagtaa aagtggcaag       180
     ccaagcacac ataaagctat gaggaaggtt aagagacagt gaaaagcagt gaattgtcta       240
     catccacaat aagaagaaat gcaaaagaaa aggacacaaa caggtaagaa acagtaaaca       300
     tgggggtgtg gagtaacaat gagaggttgt taaaatctgt ttgacttaag agacaaggaa       360
     cttaaaatat tctctatata gactactaca tacaaactca tgggagccac aaaccaaaca       420
     tctataaaag ataatacatg aaagagaaag gaatccaaac acaacactaa agacattact       480
     aaattcaaaa ggaagacagc aaaagaagaa ggaaagaaca aaaatgaacc attgagtaac       540
     cttacaaaac aaagaaaagg caataagtac atatgtatca ataattactt caaatgtaaa       600
     tagaataaat gcttcaatca tagggcatag agtggctttt aatatattta taattcataa       660
     tatcaagtta aatatctata tattccaagg gagaaatcta gacgttaaga cagcataatg       720
     atagcaattg ttggtcttgg taaaatgatc acaggtatat ttaattattt tattgatgta       780
     tgagtgcttt acaatgttgt gttagcttct gctaacacaa aactggtaag aaacagtgat       840
     tcaatgaagt gaatcaacta tatggatcac aggcattttt attttcatct ttacctgttt       900
     ctctgaactt cttcaatgaa catctttccc agcacatccc acttaagagc tgggtgactt       960
     tcgttgagtc acatcactcc tctgaacctc attttcctga tctataaact cagaactgcc      1020
     aacaccaata ttatgtgatt gctgtgagaa gaaaaacatt tagagaaatt gcctaacaaa      1080
     tagacaaagc tcattaaata tttgctacca taaaagtcaa tgtttattaa acacacaata      1140
     tttgaaaata ctaagctgag aaaaatacta gctcctgggc aaacagaaac cattttcatt      1200
     ctacagaaat caagactctt ccatggctcc ctcacagtca tatcaaataa tcctccagaa      1260
     accactagtt ttatcttgag atcagcagag ccaatgaagg accagaggac acaggagact      1320
     caggtctgag gagcttgcaa ccaaaactga cagcccaagg acgcattagt ctggctattt      1380
     ccttctcctc cccttattca gccatgccct cttaccactg acttggggcg tccagccacc      1440
     aggtccccac tttcctgcct ttactttgag cacacagccc agcggacagg atgtcaccac      1500
     tggaagcgtt cacatttttc tccttctggg cttgtgagtc actccctgac catttcactt      1560
     ttagatgaat gagcaaagaa attcttggat attccttaca ttatcagaag ttccttagaa      1620
     attctcttct tttacttgca gctggacttg ggttatcaaa agtggagcag gcccaaatct      1680
     ccctttccac agaagtaaag aaaagtattg acatacattg caagatagag agcacagatt      1740
     ttgaatcaga agctgtttac tggtaccggc agaaaaggaa tcaggctttg gagcatctgg      1800
     tttatgtgat ctcaaccaca actgcagctc gaaatcaagt agacgggaag aacaaaattg      1860
     aggcaagaaa agacgctcga atgttcactt cgacccttac ggtaaatttt gtagaaaaag      1920
     aagatgtggg catttactac tgtgctggct ggagctcacg gcactagaac tatggagata      1980
     acccacacaa gatcccctcc ccggatctgt gcccacccac atccttccca ctagcagcaa      2040
     tcagtttcac agctgggctc cccacctcag ccccacctca cctgcagcac ttccggagtt      2100
     ttccaggagg tcatcttgga tcacacttgc gcttgacctt caggctttat ttgacactgt      2160
     atcccaatga atagaattct tgggaattct agggactgag ggcacacaga ctgtgctacc      2220
     attcatcgtc tccccatcca gagacttctg tatgtgggca agcttcaggt ttagaaaggg      2280
     cattaccata ttcctttatt atgacatata ctcaagatga caaggctgct gtacaactat      2340
     tattggttca ttttataaat aaataaatag acacctaaaa aatttaatcc taacaatcac      2400
     caaagaaaag aaatccatgc tttgaactgg actgtgagat cacactgaaa agtttaagga      2460
     ttgcaattct taaagtgaat attagactat taaggataaa ttagggatga aacaagggcc      2520
     ctttttttga gagttatggg taaaaggatt ctgccagcat gatatc                     2566
Created:
23/07/1995
Database development:
Denys CHAUME, Patrice DUROUX, Nelly JOUFFRE
Database scientific officer:
Marie-Paule Lefranc