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Database contains
247103 sequences
from 361 species

IMGT/LIGM-DB sequence

Version:
1.2.9
Database release:
LIGMDB_V12
Citing IMGT/LIGM-DB:
Giudicelli, V., Duroux P., Ginestoux C., Folch G., Jabado-Michaloud J., Chaume D., Lefranc M.-P., Nucleic Acids Res., 34:D781-D784 (2006). PMID:16381979 Abstract Full PDF

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AY362770 - Annotation

Sections
Accession number AY362770
Sequence version 1
Secondary accession numbers
IMGT annotation level keyword level
Definition Ovis aries T-cell receptor gene, Vgamma1 region.
Species Ovis aries (sheep)
Taxonomy Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Ovis; Ovis aries
Sequence length 4871
IMGT/LIGM-DB dates 19-AUG-2004
  16-JAN-2013 (v. 3)

OBTENTION

Specificities
Disease related

IDENTIFICATION

Molecule type gDNA
Configuration type
Gene type variable
Molecule entity type
Functionality type
Chain type TR-Gamma-TRG
Structure type regular
Location type
Other keywords antigen receptor, Immunoglobulin superfamily (IgSF), T cell receptor (TR), IMGT reference sequence

CLASSIFICATION

IMGT Groups
IMGT Subgroups

DESCRIPTION

Literature references

[1] 1-158873
Miccoli M.C., Lipsi M.R., Massari S., Lanave C., Ciccarese S.
Exon-intron organization of TRGC genes in sheep
Immunogenetics 53(5):416-422 (2001)
DOI: 10.1007/s002510100340
PUBMED: 11486279
[2] 1-158873
Miccoli M.C., Antonacci R., Vaccarelli G., Lanave C., Massari S., Cribiu E.P., Ciccarese S.
Evolution of TRG clusters in cattle and sheep genomes as drawn from the structural analysis of the ovine TRG2@ locus
J. Mol. Evol. 57(1):52-62 (2003)
DOI: 10.1007/s00239-002-2451-9
PUBMED: 12962306
[3] 1-158873
Vaccarelli G., Miccoli M.C., Lanave C., Massari S., Cribiu E.P., Ciccarese S.
Genomic organization of the sheep TRG1@ locus and comparative analyses of Bovidae and human variable genes
Gene 357(2):103-114 (2005)
DOI: 10.1016/j.gene.2005.05.033
PUBMED: 16125878
[4] 1-158873
Vaccarelli G., Miccoli M.C., Antonacci R., Pesole G., Ciccarese S.
Joining-constant blocks as markers of TRG loci evolution in Bovidae: putative role for enhancer-like sequences in driving coordinated recombinational unit duplications
Unpublished
[5] 1-158873
Massari S., Lipsi M.R., Antonacci R., Vonghia G., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (05-FEB-1998)
Institute of Genetics, University of Bari, via Amendola 165/A, Bari, BA 70126, Italy
[6] 1-158873
Miccoli M.C., Lipsi M.R., Massari S., Fiorentino F., Lanave C., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (16-FEB-2000)
Institute of Genetics, University of Bari, via Amendola 165/a, Bari, Ba 70126, Italy
[7] 1-158873
Miccoli M.C., Vaccarelli G., Antonacci R., Lanave C., Massari S., Cribiu E.P., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (04-SEP-2002)
Dipartimento di Anatomia Patologica e di Genetica, University of Bari, via Amendola 165/a, Bari, Ba 70126, Italy
[8] 1-158873
Miccoli M.C., Vaccarelli G., Antonacci R., Lanave C., Massari S., Cribiu E.P., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (19-SEP-2002)
Dipartimento di Anatomia Patologica e di Genetica, University of Bari, via Amendola 165/a, Bari, Ba 70126, Italy
[9] 1-158873
Vaccarelli G., Miccoli M.C., Lanave C., Pagliarulo D., Cribiu E., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (23-JUL-2003)
Dipartimento di Anatomia Patologica e di Genetica, University of Bari, via Amendola 165/a, Bari, Ba 70126, Italy
[10] 1-158873
Vaccarelli G., Miccoli M.C., Lanave C., Pagliarulo D., Cribiu E., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (25-JUL-2003)
Dipartimento di Anatomia Patologica e di Genetica, University of Bari, via Amendola 165/a, Bari, Ba 70126, Italy
[11] 1-158873
Vaccarelli G., Miccoli M.C., Antonacci R., Pesole G., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (11-SEP-2006)
Dipartimento di Genetica e Microbiologia, University of Bari, via Amendola 165/a, Bari, Ba 70126, Italy

Database cross-references

Database Identifiers Relation
ENA AY362770

Sequence

Length : 4871 BP
Composition : 1523 A; 1005 C; 1053 G; 1290 T; 0 other

     ggatccaaaa cagactttgc aaactgatct gagtgtgaca aacacccagg gccactggat        60
     ggtgcacaca gtgcagtgtg aataatactg caaatccttc gaaaactgca ctatctggac       120
     ctgcccatca aagacaggta gggatttata ttccataact ggattatttc ccagcaaaca       180
     aaatatcaac atgtgtagta tataatccaa aattactcaa cttatagaaa gccaggaaaa       240
     cctcagcata ctaatcgtag aaaagtcagt taacagatgt cagtccttaa atagggcttc       300
     cctgacagct cagctggtaa agaatccacc tgcaacgcag gagaccccgg ttcctgaata       360
     gagtgacaaa gaacttaaaa tagttatgaa gacccgtggg aggaactcga aagagggaga       420
     gatagaaagt aaaataggta agagatataa acagagaaat agaacaggaa agacgggtgg       480
     tggatgtagg caagtagaga gatagagtca gaaatagaga tgaagaaaga aatattaaaa       540
     cagaaagaga gattaaagag aaagagagat taaagagaaa gagagaaggg gaagaagtca       600
     gatctgaaaa gaaagagggc gggggtgtag caataggaaa cagagaagat ctgtgaacat       660
     agagatgggc agacagaggg atgtaaagaa tggtgcattg gggagataga gaaacagaat       720
     ggtgagagga gtaagtgggt cagtcaacag acagctgtta agcagtcagg agagtcatct       780
     aaacccacca cataattagg ggccacatat ggtgacttca tatattcata taaccacagc       840
     tactttgcct gttcatctgt tgatgggctc ttagctgtta taaacagtga acgtaggagt       900
     gcagctatat tttagagttt ttgttttctt ttgataaact ctcagaagta gaattgctgg       960
     accatgtggt agctccattt tcaactcttt gaggacatcc acattgtttt cagtagtgac      1020
     tgaaccaatt tgcattccac caaatgtgta cttagatggt aaagaatccc tggaggctca      1080
     gatgataaag aatttgcctg cactgctgga gacctgagtt ctatccctgg gttgggaaga      1140
     tcccctggag gaaggcatgg caacccactc cagtattctt gcctggaaaa tccccatgga      1200
     cagaggagcc tggtgggtga cagtctatgg tgtcacacag aattggacac aactgagcga      1260
     ctaagcacag cgaaagtgta caagggttct ctttactcca tatccttacc aacgtgttgt      1320
     ttgtgttctt gataatagcc attctgacag atgtgagatg atatctcatt gttgtttcaa      1380
     tttgcatttc cctgaatttc agataagtaa ttttttttca tttgtggatg tttcaaatat      1440
     tgcaaagttc cttgcatttt tttccccgca aaatctggaa accctgtata agacagcctt      1500
     ttacttgagg atgaacataa atcctccatc aaactgtttt atgaggcatg cacacacaca      1560
     aacacacatc tgtttacttt aaaggagagt cagatgtaga cccgtataac tgatattaat      1620
     ttcttttaat aaggctcatt caattcttat tggatttgct gcttgaagtt ggcttatgta      1680
     actggctgat gtaaaaggaa aggtagttca gggaaacgat ataaagatgt ttaatcacca      1740
     gataagacca tggcatcaac attaacactg aaaggctgaa ctgcagggaa tttagcccga      1800
     ttcaggtctt ctcactccac caggaacagg caagttttgt ccatgtttct ccccgcagcc      1860
     cccagtctga ctgatccctc tgcttggagt tctgagctct ctcaagtggt caggcatctc      1920
     ttctcctggg tgggggaggt gcagcctgcc acaggggcgt cttcaagaag agggttggta      1980
     cagagaggcg cagctccacc caggcctctt ccgacaccac cccctctggg ctcagcctgg      2040
     tggttttaaa gaaagatcct ccttgactcc cctgcctgtc acatctgctg agaaccccag      2100
     tctagctcac tgtcccaggc atgttgtggg ccctagtgct gcctttggtt ttcctggctc      2160
     ttggtaagtg tgttgcctgg atgctcaagt ggattttttc tgtattttgt ggcattagtc      2220
     ggggcaggga agggtcatac aagaaatggg tgtttcctct tcatcattat tttttgttgc      2280
     ttttcccatt gcagtcactc aggtatcttc caacgcaaaa ggggcccaga tgtcagtcac      2340
     tgctaagact tgggacacta cttctttcac ttgtgatttt acacaagatg tcaaatatat      2400
     ccacctgtac aaacaacagg aggggatggc tccccgacgt cttttctact acgatgtcta      2460
     ctactccaag attgagttcg aatcaggaat cgataaagca aaatacagtg tttataaagg      2520
     tgcagcagga aggagctaca gatttgcaat cctaaatctg gaacacagtg attctgggac      2580
     gtactactgt gctgtctggg ataagcacgt cggttcagac ttcctgtaca ctgcactgga      2640
     aattttgctt gtggctgcca agtgcagctc tggtaacaac ccctgcctca cttcttcccc      2700
     agattttctt tactctggac aaagagaaac cctgagctca atgcccattt ccgaagtttt      2760
     atattccatg gccacctcct ccctctccac aacagccata gtttttcctg aaaacagacc      2820
     ttcatcccca ggctgtaagc aagcaatcta gcaggcagca tatcctcact ctcctaggaa      2880
     ctgatagagt tcatataagt ttttctttag gaaaaacagg gcatctagga ttgatctctt      2940
     aggaaagaca tttagaagag caaaatggaa aggctagaca atatggaatc atcagttcca      3000
     tcattatcca gagaaaatgg ctgggaatgg agcatcttca ttattcagga atatgaaaaa      3060
     taagaaatga tggaatgaaa acttgagact tcctaaacct caagctggta tctgatcact      3120
     cttttggaca aatagatatt ttccttatat aaccagctag ggcatgactg acatagtgaa      3180
     agtgtaggaa aaaagtgatt gttttaggta agccaaccat gatattctac ttacaccttc      3240
     ttttgaagtt cagcccacag ccgaaactga tctgtctggt aacagataaa gtggtatgtc      3300
     tccctttgaa atgggccagg tcccagtctg acacattctg gcagagtgct tgtgagcttc      3360
     ctcccaacca agaagcccct cctctcttac tgcacccctg ggcactgctg ctctcccagg      3420
     tcatcatatt tgttcatgat aaccccacaa ccacaagtca aagcttcagg tccttctact      3480
     tctgtgactg cagggaagat gggattggct agtaaatgca ccagctttaa cttgctgtag      3540
     tgttcagcaa gctctgggag ttggtgatgg acagggaagc ctggcgtgct gcagtccatg      3600
     gagttgcaaa gagttggaca tgactgcgca attgaactga acttgaactg atcagcaacc      3660
     acatggttta actgtttgca gctttaggac agtctgaaat gttaaatata ttttaattta      3720
     gatttttcca ggggtggtaa gattttgttc tgtacatttg tttctttgat ctgctgtgat      3780
     ttcaatttct gtgtatgagg gtaaggtagc aatcttaata tggagatcca ttttcttccc      3840
     cagttactga caaatacatc attacaccac tgtttttcat catcacttag tgataactat      3900
     ctttttatat gctcacattt tctccctcct cttccactct ctacctgctt tacaggccag      3960
     tttctccaag ggcacaacta gaggtggcag ttactatgta cacacaagga acacaatcac      4020
     aatcatgtgt aggataaaaa atatgctgta cacaacctgt gtgtgaccaa agaaatcaga      4080
     gaaaagaaaa aatgcttgaa gacaataaaa atggaagtga gtgaagcaaa agttgctcag      4140
     tcacatttaa ctctttgcta ccccatggac tatgcagtcc atggaattgt ccaggccaga      4200
     ataatggagt gggtagcctt tcccttctcc aggggatctt tccaacccag ggatcaaacc      4260
     caggtcttct atagtgcagg tggattcttt accagctgag ccacaaggga agcccaagaa      4320
     tactggagtg ggtagcctat cccttctcca gtggatcttc ctgactcagg aattgaacca      4380
     gcgtctcctg ctttgcagac ggcttctttt ccaactgagc taacagggaa accccaaaat      4440
     agaagaacac cataaaaatc tgtagcacac agcagaagca attctaagag taaggtatat      4500
     agtgatacaa gcctacctca ggagacaaga acagcctgaa taaacagcct aaactaacac      4560
     ctaaaagaaa tagagaaaag aagaacaaac aaacctaaaa gtaatagaag gaagaataat      4620
     aaagatcaga gcagatgtaa ataaaataga gcctaaaaga acaatagaaa atatcagtga      4680
     tattaagaac tggttttttg aaaagacaaa ttcggaaaaa caaatttatc aagtaaaaaa      4740
     gagaaaaatc tcaaatataa aaaattagac atgagataga agaaactgca attgacacca      4800
     tcaaaataca aatgataata agacattact gcaaatcatc atttgccatg caagaaaaca      4860
     gacaatctag a                                                           4871
Created:
23/07/1995
Database development:
Denys CHAUME, Patrice DUROUX, Nelly JOUFFRE
Database scientific officer:
Marie-Paule Lefranc