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Database contains
247103 sequences
from 361 species

IMGT/LIGM-DB sequence

Version:
1.2.9
Database release:
LIGMDB_V12
Citing IMGT/LIGM-DB:
Giudicelli, V., Duroux P., Ginestoux C., Folch G., Jabado-Michaloud J., Chaume D., Lefranc M.-P., Nucleic Acids Res., 34:D781-D784 (2006). PMID:16381979 Abstract Full PDF

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AY362775 - Annotation

Sections
Accession number AY362775
Sequence version 1
Secondary accession numbers
IMGT annotation level keyword level
Definition Ovis aries T-cell receptor gene, Vgamma4 and Vgamma7 regions.
Species Ovis aries (sheep)
Taxonomy Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Ovis; Ovis aries
Sequence length 9485
IMGT/LIGM-DB dates 19-AUG-2004
  16-JAN-2013 (v. 3)

OBTENTION

Specificities
Disease related

IDENTIFICATION

Molecule type gDNA
Configuration type
Gene type variable
Molecule entity type
Functionality type
Chain type TR-Gamma-TRG
Structure type regular
Location type
Other keywords antigen receptor, Immunoglobulin superfamily (IgSF), T cell receptor (TR), IMGT reference sequence

CLASSIFICATION

IMGT Groups
IMGT Subgroups

DESCRIPTION

Literature references

[1] 1-158873
Miccoli M.C., Lipsi M.R., Massari S., Lanave C., Ciccarese S.
Exon-intron organization of TRGC genes in sheep
Immunogenetics 53(5):416-422 (2001)
DOI: 10.1007/s002510100340
PUBMED: 11486279
[2] 1-158873
Miccoli M.C., Antonacci R., Vaccarelli G., Lanave C., Massari S., Cribiu E.P., Ciccarese S.
Evolution of TRG clusters in cattle and sheep genomes as drawn from the structural analysis of the ovine TRG2@ locus
J. Mol. Evol. 57(1):52-62 (2003)
DOI: 10.1007/s00239-002-2451-9
PUBMED: 12962306
[3] 1-158873
Vaccarelli G., Miccoli M.C., Lanave C., Massari S., Cribiu E.P., Ciccarese S.
Genomic organization of the sheep TRG1@ locus and comparative analyses of Bovidae and human variable genes
Gene 357(2):103-114 (2005)
DOI: 10.1016/j.gene.2005.05.033
PUBMED: 16125878
[4] 1-158873
Vaccarelli G., Miccoli M.C., Antonacci R., Pesole G., Ciccarese S.
Joining-constant blocks as markers of TRG loci evolution in Bovidae: putative role for enhancer-like sequences in driving coordinated recombinational unit duplications
Unpublished
[5] 1-158873
Massari S., Lipsi M.R., Antonacci R., Vonghia G., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (05-FEB-1998)
Institute of Genetics, University of Bari, via Amendola 165/A, Bari, BA 70126, Italy
[6] 1-158873
Miccoli M.C., Lipsi M.R., Massari S., Fiorentino F., Lanave C., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (16-FEB-2000)
Institute of Genetics, University of Bari, via Amendola 165/a, Bari, Ba 70126, Italy
[7] 1-158873
Miccoli M.C., Vaccarelli G., Antonacci R., Lanave C., Massari S., Cribiu E.P., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (04-SEP-2002)
Dipartimento di Anatomia Patologica e di Genetica, University of Bari, via Amendola 165/a, Bari, Ba 70126, Italy
[8] 1-158873
Miccoli M.C., Vaccarelli G., Antonacci R., Lanave C., Massari S., Cribiu E.P., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (19-SEP-2002)
Dipartimento di Anatomia Patologica e di Genetica, University of Bari, via Amendola 165/a, Bari, Ba 70126, Italy
[9] 1-158873
Vaccarelli G., Miccoli M.C., Lanave C., Pagliarulo D., Cribiu E., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (23-JUL-2003)
Dipartimento di Anatomia Patologica e di Genetica, University of Bari, via Amendola 165/a, Bari, Ba 70126, Italy
[10] 1-158873
Vaccarelli G., Miccoli M.C., Lanave C., Pagliarulo D., Cribiu E., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (25-JUL-2003)
Dipartimento di Anatomia Patologica e di Genetica, University of Bari, via Amendola 165/a, Bari, Ba 70126, Italy
[11] 1-158873
Vaccarelli G., Miccoli M.C., Antonacci R., Pesole G., Ciccarese S.
Submitted to the ENA/GenBank/DDBJ databases (11-SEP-2006)
Dipartimento di Genetica e Microbiologia, University of Bari, via Amendola 165/a, Bari, Ba 70126, Italy

Database cross-references

Database Identifiers Relation
ENA AY362775

Sequence

Length : 9485 BP
Composition : 2908 A; 1987 C; 1931 G; 2659 T; 0 other

     aagcttgtca gcttctgctc ccttcttcac ttgatggctc attgagtaat taaaagcacc        60
     ccataaagca gtaatgggat gtccatagca gggccctctg tatcagatct tagaggagaa       120
     ttcttcagca gcttcttaca tgtcaggata aatggtgaat aacagggaaa gatttacact       180
     gtgttcaaac gatagaaaac tatgcagccg ttaaaaacaa cgttttcagt agttaagaat       240
     ccaccttcca atgcagggga caaggggtta attcttggtc aggcatctga gattccacat       300
     actgtggggc aactacagaa cctgtgtggc caaaactata aataaataaa caaatttaaa       360
     gttaaaaaat gtaccataaa aaaagaaatg tatgcaggca aggtgcacct gtggaaggtg       420
     aggcaaaaga agcttaaata attcagccca tgtcagatgg ggtaagtgat attggaaatg       480
     gtttaatttt ctttagtcat taaaaataac tattaataat taaacataat atctcattta       540
     aaactgtgtt gctggggatt ccctggtgcc tcggtggtaa agaatccacc tgccaatgca       600
     gggttccatt gctgatctgg gaagatccca cacgccatgc agcagctaag cccatgtgcc       660
     acaaatactg agcttgtgct ctagagcctg agagccacaa ctactgaagt ccgtgctccc       720
     tagagcccgt ggtctgcaac agaagaagcc accacaatga gaggtccaca cgccacaact       780
     agagagtagc ccctgctctc agtaactaga gaaacgcccg agcagcaatg aagacgcagc       840
     atagccaaaa ataaataaat aaataaaatt acatttaaaa agctgtgctg cttacaatca       900
     taagataact gaacaagaat ataaagctaa aaatgcaaat tccacttaaa tatatattta       960
     tataaataat acccattagt ccgatctcta gccataaaaa tgcagagaaa ttttcaaagt      1020
     aaatgatctg tgcttttttg ttctctttgc atcttatttt acccatttcc tttaataaat      1080
     aatggttgct tttgggagtt accacattta ctagctccac gtcattttaa atgagtctgt      1140
     tcaccacggt tctcctttgt caaatggaaa tattcataac agctacctcc caggatagtg      1200
     aagaagatta aataaaataa tatgagaaca tttagaacca tgcctgatga atagaaagtc      1260
     ctcaatacat actagatggc atattaattt taaaggttat cactgcatat tcaacagaac      1320
     attgctttta aaatactcct gcatgtgata tgatgctcat gaaactgttc tcaggtccag      1380
     gttgagtaga agctgatttc cacagactac tctgtctcaa agatccacaa ggaattgcaa      1440
     tgtaggcagt tgaaggcacc cagattgtaa acaaactgtg atttctctgg atggtaattt      1500
     gcatggtgac atctcaatta attaaaaaaa aaaacctcaa aaatattcca gtgcttgtgt      1560
     ctgtagcata ttaaatcatg tcaagaagat gttctaatgt ttgatggttt tctgtagcat      1620
     tacagaaaaa taagggtcag gtttaataca caagccctgg atcaccaacc atttacaaaa      1680
     aaacagacaa gggaaagaac acagcaggga tgtcttccta tttctgcagc aacattacta      1740
     cggagtgaaa tttcagggag atgagctgag cagctaggag agtagcccca ccctcaagtg      1800
     tacgcattca tctctgggtt gtctgtccag atcatcatcc ttttcttaaa ccatctgccc      1860
     aggacttagg ggcaggaaac ccccatgaaa ccacagctgc tcatatctgt tgcagattat      1920
     gaagaacccc agataaccat accaccagat acacctcttc ctctgggaca caagatccag      1980
     gcccactccc ctgccactgg cctgagactt ccttccaaca gaccttgcct tttttacctt      2040
     ctccctggga gtcagtctgg tgacgagatg gcactcctgg aagcggtcct cttctcctcc      2100
     ctctggtctt gtgagttgcc ctctcagtca cttcagtcta caggagagac tgaagcaggt      2160
     ctttcttgtt gcctcttccc atgtcttttg tttatgggga tttctcttct ttgcttgcag      2220
     ttggccttgg gcaattaact ttggagcaac ctgaattatc agttactgga acaagagaaa      2280
     agagtataat tatgacttgc aaggtgttct ctaaggactt tagcaaagat tacatccact      2340
     ggtaccggca aaaacctgat cagggtttag aacagctact atatgtctca acagcccctg      2400
     cgcagaatca cttaggaggg aagaaaaaca agcttgaggc cagaaaagat gctccctctt      2460
     ccacttctac cttgaaaata agttttttag agaaagaaga tgaggctaca tactactgtg      2520
     ccggctggtt gagcgcccac agtgtgggag tttcttggat aacacacaca agaaccagca      2580
     ccaggtctgt gctcaccaca tcctcaacac aggcagccac aggggttgca cagctgggag      2640
     ccctgcctaa gcctcccact aaggaaagtg agtcttgtat gatatttttt taactatcca      2700
     gagattactt gcaagttaca tggttccgtc tcaaagagga aatcaccctg tgccagaaat      2760
     attgatattt attacatctt atatcagcat cacaacacag atgcaatgta atgttcatgt      2820
     tttccatgtc aatactagta atttaagatg tagcagaata aaatgacttt ttaaacccta      2880
     aatcccatgt cccttcaatt ctttcaggcc atcctgaaga agttcagagt ctggttattc      2940
     cctgcagact ggggtgaaag cgagatgagg ctctttccct ttcttccgtg aatggggtga      3000
     ctgttgactg tgcactcagg gtttgtgtta cagcctgacc accacagttc cttttgcaca      3060
     ggcctgtgac cccccagagc cattagatga tcccagaaca aggtagacac tccagtcagg      3120
     atccttttcc ccaggattct gcagtgaacc tgcagagcct catactggct atgcattcag      3180
     ttgctactgt ttctgacact gttctaatta ggtaaattgt tctcatgttt gagataatcc      3240
     actgacattg gtgctgccat gagtcacatt ttgtaactga tgaaacagaa gcgtggagat      3300
     gtgattttct ttgtggtcac agttaaatga atgggggttg gaggcctgca gctggatggg      3360
     aaaaaaatag tagactcact tcattaagca tgcaaacatg aaaacaatga attaaaatct      3420
     actaaaatat ttatttattt ggctgcgctg ggtcttagga tctagttgtg gtatgtagga      3480
     tctagttccc tgacaaggga tcaaacctgg gctccctgca ttgggagcat gagtcttagc      3540
     actggaccac cagggaagtc tcaaaaagac gatggaataa aatctttaaa atgatggaag      3600
     agaaaatgga catctcagca aaaatatgct tcagaagtac aggagaaatg aagaattctc      3660
     agacaaaaca aaattgagga aacccattgc cagccaacct attctatgag agatgttaaa      3720
     gtaagctatt taggcgtaaa acgtacatta caggtcaaaa tttgaattta cagaaacaca      3780
     tgatatgtac tacaagtatg ataaatgaat gtaaatgttc tttttaattg ttccaaaata      3840
     ggagttgtca gacattttct gtgaaggaaa tattttcagt tttgcatgcc atatagtttc      3900
     tgtccccacc cttcagcttt gccagggcag cacgaagcca ctttcccttt agacctcaag      3960
     ggacatggaa ctgctacatg actgggaggg tattggtatt gagaggtcac ctaatgggag      4020
     ctgcagcctt tagtaaaggg acacaacagc ctgttgatgc aaataatcca taaacaatct      4080
     ttaacaagaa tacaaaaatt ttttacttga gttaaactga aggcaacagc ccaggtgaca      4140
     cagatttata aaccatagtt tgttgtgtta ataattaaga ctagagccag caagatataa      4200
     aaggtgaccc caagaccata aggttgcagc tggcagctgc tagcagataa cagtttttaa      4260
     aaggactgat ggtgcccctg agtttgatac ccttcagaaa attcaagttc ttagtagtgc      4320
     agaaacatgt ctgaaatcac attcacaatg gcactggcac catttgggat gcctcaatga      4380
     catttttatt tctctcagaa caaagaacag acatcaaaca ctgcaagggt gctcttctgc      4440
     aagatttcaa agagacagat tagcgtgtgc atggtgactc agcttgacct tggtgtctgg      4500
     aaaagaaatc tcatcttcaa aggagtgtta gcataggagg ggaggaacgt ttatttgtat      4560
     cctcaaagtg gatgctctaa acaatctggt taatgcagcc atgaaattaa aagatgcttg      4620
     ctccttggaa gaaaagctat gaccaaccta gacagagtat taaaaagcag agacattact      4680
     ttgccaacaa aggtccatct agccaaagct atggtttttc cagtagtcat gtatggatgt      4740
     gagagttgaa ctaaaaagaa agctgagcac tgaagaattg atgcatttga actgtgatgt      4800
     tggagaagac tcttgagagt cccttggact gcaaggaggt ccaatcagtc catcctaaag      4860
     gaaatcagtc ctgaatattc attggaagga ctgatgctga agctgaaact ccaatacttt      4920
     ggccacctga tgtgaagagc tgactcattg gaaaagaccc tgatgctggg aaagattgaa      4980
     agagggagga gaagggaaca acagaggatg agatagttgg atggcattac tgacgtgagg      5040
     gacatgggtt tgagtaaact ctgggagttg gtgatggaca gggaggccta gcatgttgcg      5100
     gtccatgggt cacaaagagt cagacatgac tgagtgactg aactgaactg aatttatttg      5160
     tgagatgcag gcaaacaagt ggagcaataa ggaaatgaag cttgaaaaag aagacagatc      5220
     ataaagtata ttttagtaag ctactaggtg accaaaggga gcataacagg gtttcaaaac      5280
     tgagtgatga attaagtaat gaattttcta ttctgctctc ctgttttgtg gacttccatg      5340
     taaaatgaaa agagcctgtg ggaccctaac ttatctgaca gtcaacgtgg tggtcaatta      5400
     aagaaccttg ccaagagtca gaaccctaca aggaagaaat tacagaatat aaaaatgttc      5460
     atggtatcct attaaataat aaagacagca taacattgta tatacatcat catacctatg      5520
     tgaaacaaaa ttttaaaagg aatagacatt aatttgtaag agaatgcact gttacctcct      5580
     agctgtctct atgtaatggg acaaaaagcc attgtcttct cctctgtttg tgtttcttta      5640
     tgatccatac tgaggctgca ctcattttat aatagaaaat aacaatggct tttgctttta      5700
     aggcctattg aggcactcca aggacacagc atctctaagg atcccattta atggtcatat      5760
     tcaaaaataa gaatctaaaa taaatcttct tcagctgggt tatagaaagt atagagcagg      5820
     gtcatacact actagtaagc tgtccctaca tctgtgattg cctgatgcag tatagtgacc      5880
     atcaaagatg tttcaagttc ccatgagcct gtctcaagcg aggactttgg cctctcttcc      5940
     ctcgtctttc tcttcccctc tgttagatca ataaaagact ttaatccatt aaccataaaa      6000
     ttgtttcttt atattgtcac tggttggtga aaatcacagg gtgattgaaa gaaatctgct      6060
     gatgaaatag cagccctatt tccacaggat gtttgagaat taccaccagc ccctgtcccc      6120
     gtagcctgga tcctagctgt gtgctctgaa taccacttcc tcctactaaa tcagcctgct      6180
     ggtttgctct gcaatcttcc cgttattcaa tcacatctcc tggcaagagc tggcagcatg      6240
     ctgctcctgc cccaggtctt ggtggtggcc tccctctgga catgtgagtg gctttaccca      6300
     aggaagggga ttgatcatgg acagtcacat cacccctttc aggtggacgc tggtcacacg      6360
     gtctttggag ctaggctgaa aaattccacc aatatcttga gttcttccag aagaaaatgt      6420
     aaacatcagt ccccaggttt ttcatgagta gagaatacat gtagactacc ttaatgaatt      6480
     acaaattttc attaattttg cctgtttttt atttcagaca caagtggaga tcttccaata      6540
     acacaacgcg taacatccat taccaagaaa aaaggaaata cggcatttct tgaatgccaa      6600
     ataaaaatag ataagttaaa aagaatgtat acatgcactg gcaccgacag aaaccagagc      6660
     agcctctaaa acgaattctg catgtttcct ccaacgagaa tgttgttcac gaacaaggga      6720
     ttagtgagga aagatatgag gcaaggaaat ggccgagtaa cgcactggtt agcctcagga      6780
     tacaccaggc tactgaagag gatgcgggcc tctactattg tgcctgctgg ttgggacaca      6840
     cgttgccgaa gagatcagct gtcattgaac gaaaaccgcc ctcacgccaa cgcgtctggg      6900
     caaaagcacg ctacccccta ctcgccaccg ccgccgcccg ggctgcccct gctttctgcc      6960
     tcctataaag ggctcttttc ttgcacatgt gccctgagca gtgtctgagc aactagccca      7020
     ggacctgatc cgtgaggctt ttttcagtta gatcacttta tcctccatcc caaactcttg      7080
     gtcataggct ggctttttaa attaccccaa atggtcagag cttcatcatg tataggagga      7140
     gcctcttggg aaagaaccat aaaccagtgc tcaacgtgat gtgttggctt ggaaaaagag      7200
     agagaatgaa tgaatgagtg agtggtggaa aagacgaggt ctttttagtg acacaggact      7260
     gggtttctaa ctcctgctta tccgttccct gacagggtga cctaggcaag ttactgaatc      7320
     atttatttct gttttctcat tttattttta ttctatttat ttatttaaaa tttttatttg      7380
     gggtacagtt gacttacttt gttatgtttc tgctgtacag taaagtgaat cagttgcaca      7440
     tatacgtaca tccggtcttt tttttacaga ttcttttccc atttaagcca ttacagagtg      7500
     ttgaggatag ttccctgtgc tagacagtaa atttttatta gttatctatt ttatatatag      7560
     tactgtgtgt atgtcaatcc aaatctccca gtttattcct tcccttctta tcccctggtt      7620
     aaccatgttt gttttctaca tcccttgact ctacttctgg tttgtaacta ggatccttta      7680
     tacctctttt ttaaagattt tacatacagg caatatcaaa tgatatttgt ctttctgcat      7740
     ctgatttacc tcactctgtg tggaaatctc taggtccatg tcttcccaat tttcagaggg      7800
     catggtgcta acaaccacat agattgctga agactgaatg aggttcacac aggaatgttt      7860
     cagcacagtg ttcaacaaat cacagtgtcc taacctgcct agactaaatc acttcagagt      7920
     catcacagct aaaataggaa ctcaggactt aaaaaatcac atcttccatt gtcctccaaa      7980
     ctacagtaaa gcatagattt aatgctgaaa aactaagaat tgtaaatagg aaaagattga      8040
     agggtaacaa aacaagggga ttttgtttcc tgcaacactt ttcttcattc acagcagaac      8100
     gaagaaatgg catatagtaa catcacagga tcctaagcaa taactacaat aattgttggc      8160
     atttacacaa ctttgtgaac tttctgcaaa tgagtgatct atataatata caacctcctc      8220
     catattcata ttcatgtgtt actatctaca gtaatgatag tatctttctc attcttacga      8280
     tagccatacc tcaatattca cactctcaca aaatatagtg aaaataatct ataactcaga      8340
     gaatgaaaag gagcccaagg atatgtgcat ttgaagcaac acatcaagga aaagtggaag      8400
     agaattgctt ccaaggtgtt aataacatta aattatcata ttaaaaaaat tacttggctg      8460
     catcaggtct tagctgtggt atgcaggatc tagttccctg accaactgaa ctcggggccc      8520
     tgcattggga gcctggagtc ttaaccactg gacgtccagg gaagtcccaa cagtacatta      8580
     ttataacata agtggttttt gatgaggttg ttgggagtct gaaagctctt ttataccaat      8640
     aagatgatta aaaataacac tgtgacagat ctgagaaaga ctttcattgg ttcttaaagc      8700
     aaagcttcct cccacatccc tgcctccaca gaacaagggc tgccactgca tctcctgttc      8760
     tgtcctgatt cacaccctat tcttaccaat tactggcaat gccaaccacg tggattttcc      8820
     ttatgtcttt ggcttgggtt tgtaggttga cttctatcct ctctcctttc tttccattgt      8880
     ttttgtgtca gcctttttaa gtctgcctct gattacctcc cttgcttttc agatggagac      8940
     atcaaaatga gaatttctca gaatcaactc tcctctaccc gaagaccaga cagaacagtg      9000
     cacataagtt gcaagctgtc aggggttccc ctggagaatg ccattgtgca ctggtatcaa      9060
     gagaaagaag gggagcccct gaaacgaatc ctttatggct cagctaacag ttataagctg      9120
     gacaaaccta attcccgtac ccgaagacca gacagaacag tgcacataag ttgcaagctg      9180
     tcaggggttc ccctggagaa tgccgttgtg cactggtatc aagagaaaga aggggagccc      9240
     ctgaaacgaa tcctttatgg ctcagctaac agttataagc tggacaaacc taattcccgt      9300
     ttggagatgg ataacaaaaa gaatggaatc ttttacctga taatcaataa cgttgtcaag      9360
     tccgatgaag ccacttacta ctgtgcctgc tgggatctca cggtattaca gagtcagaag      9420
     gaacgtggaa gaaaactttc tctattacta accctcatct gcccctgccc ccaccaccac      9480
     tcgag                                                                  9485
Created:
23/07/1995
Database development:
Denys CHAUME, Patrice DUROUX, Nelly JOUFFRE
Database scientific officer:
Marie-Paule Lefranc