D90159 - Annotation
| Accession number |
D90159 |
| Sequence version |
1 |
| Secondary accession numbers |
|
| IMGT annotation level |
by annotators |
| Definition |
Homo sapiens gene for immunoglobulin kappa light chain, partial cds. |
| Species |
Homo sapiens (human) |
| Taxonomy |
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens |
| Sequence length |
300 |
| IMGT/LIGM-DB dates |
15-MAY-1995 |
| |
16-JAN-2013 (v. 15) |
OBTENTION
| Specificities |
|
| Disease related |
|
IDENTIFICATION
| Molecule type |
gDNA |
| Configuration type |
germline |
| Gene type |
joining |
| Molecule entity type |
J-gene |
| Functionality type |
functional |
| Chain type |
IG-Light, IG-Light-Kappa-IGK |
| Structure type |
regular |
| Location type |
|
| Other keywords |
antigen receptor, Immunoglobulin superfamily (IgSF), immunoglobulin (IG) |
CLASSIFICATION
| IMGT Groups |
|
| IMGT Subgroups |
|
DESCRIPTION
| J-GENE |
|
<1..300 |
| |
cell_line |
KOBK101 |
| |
cell_type |
Burkitt's lymphoma pre-B tumor cell |
| |
clone |
lambda KC-1 |
| |
db_xref |
taxon:9606 |
| |
IMGT_allele |
IGKJ4*01 |
| |
IMGT_gene |
IGKJ4 |
| |
mol_type |
genomic DNA |
| |
note |
Sau3AI site |
| |
organism |
Homo sapiens |
| 5'UTR |
|
<1..14 |
| J-SPACER |
|
<1..7 |
| J-HEPTAMER |
|
8..14 |
| J-REGION |
|
15..52 |
| |
IMGT_allele |
IGKJ4*01 |
| |
IMGT_gene |
IGKJ4 |
|
|
gctcactttcggcggagggaccaaggtggagatcaaac
A H F R R R D Q G G D Q
L T F G G G T K V E I K
S L S A E G P R W R S N
|
| J-PHE |
|
22..24 |
| DONOR-SPLICE |
|
52..54 |
| 3'UTR |
|
56..300 |
Literature references
[1] 1-15
Kato S.
Homo sapiens Ig kappa light chain gene, J-region
Unpublished
[1] 264-300
Kato S.
Homo sapiens Ig kappa light chain gene, J-region
Unpublished
[2] 16-263
Kato S., Tachibana K., Takayama N., Kataoka H., Yoshida M.C., Takano T.
Genetic recombination in a chromosomal translocation t(2;8) (p11;q24) of a
Burkitt's lymphoma cell line, KOBK101
Unpublished
Database cross-references
Sequence
Length : 300 BP
Composition : 88 A; 51 C; 69 G; 92 T; 0 other
gatccctcac tgtggctcac tttcggcgga gggaccaagg tggagatcaa acgtaagtgc 60
actttcctaa tgctttttct tataaggttt taaatttgga gcgtttttgt gtttgagata 120
ttagctcagg tcaattccaa agagtaccag attctttcaa aaagtcagat gagtaaggga 180
tagaaaatta gttcatctta aggaacagcc aagcgctagc cagttaagtg aggcatctca 240
attgcaagat tttctctgca tcggtcaggt tagtgatatt aacagcgaaa agagattttt 300
