IMGT/LIGM-DB logo
Database contains
247103 sequences
from 361 species

IMGT/LIGM-DB sequence

Version:
1.2.9
Database release:
LIGMDB_V12
Citing IMGT/LIGM-DB:
Giudicelli, V., Duroux P., Ginestoux C., Folch G., Jabado-Michaloud J., Chaume D., Lefranc M.-P., Nucleic Acids Res., 34:D781-D784 (2006). PMID:16381979 Abstract Full PDF

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Z13001 - Annotation

Sections
Accession number Z13001
Sequence version 1
Secondary accession numbers
IMGT annotation level by annotators
Definition O.aries rearranged T-cell receptor gamma
Species Ovis aries (sheep)
Taxonomy Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Ovis; Ovis aries
Sequence length 507
IMGT/LIGM-DB dates 07-MAY-1996
  18-JAN-2013 (v. 6)

OBTENTION

Specificities
Disease related

IDENTIFICATION

Molecule type cDNA
Configuration type undefined, rearranged
Gene type constant, variable, joining
Molecule entity type L-V-J-C-sequence
Functionality type productive
Chain type TR-Gamma-TRG, TR-Gamma-3-TRGC3
Structure type regular
Location type
Other keywords antigen receptor, Immunoglobulin superfamily (IgSF), T cell receptor (TR), IMGT reference sequence

CLASSIFICATION

IMGT Groups TRGV
IMGT Subgroups TRGV2

DESCRIPTION

L-V-J-C-SEQUENCE   1..>507
  breed White Alpine
  cell_type peripheral lymphocytes
  dev_stage 61 day old fetus
  organism Ovis aries
5'UTR   1..44
L-V-J-C-REGION   45..>507
atgctgtgggtcccagcactcctgattttcctggctcctgtcacacaggtatcttccaacatgggagaggacaagttgtcagtcacgagggcgactgggtcatctgttgtaatcgattgtgatcttacacaaaactatatccactggtacaaattccaggagggaactgtgccccgacgccttctctactacgatgtctactactcaaaggttgtattggactcaggaatcagtgaagggaaataccacgtttacaaaggcacagggaagagctacacgttcgtaatctcaaacttgcaagaaagtgattctggcacgtactactgtgctgtctggggggacagttcaggctggaagaagatatttggaaaagcaactgagctcatagtagcttcccctgatagagaccttgataaagacatgtctcccaagcccactatgtttcttccttcgattaccgaaa M L W V P A L L I F L A P V T Q V S S N M G E D K L S V T R A T G S S V V I D C D L T Q N Y I H W Y K F Q E G T V P R R L L Y Y D V Y Y S K V V L D S G I S E G K Y H V Y K G T G K S Y T F V I S N L Q E S D S G T Y Y C A V W G D S S G W K K I F G K A T E L I V A S P D R D L D K D M S P K P T M F L P S I T E
C C G S Q H S * F S W L L S H R Y L P T W E R T S C Q S R G R L G H L L * S I V I L H K T I S T G T N S R R E L C P D A F S T T M S T T Q R L Y W T Q E S V K G N T T F T K A Q G R A T R S * S Q T C K K V I L A R T T V L S G G T V Q A G R R Y L E K Q L S S * * L P L I E T L I K T C L P S P L C F F L R L P K
A V G P S T P D F P G S C H T G I F Q H G R G Q V V S H E G D W V I C C N R L * S Y T K L Y P L V Q I P G G N C A P T P S L L R C L L L K G C I G L R N Q * R E I P R L Q R H R E E L H V R N L K L A R K * F W H V L L C C L G G Q F R L E E D I W K S N * A H S S F P * * R P * * R H V S Q A H Y V S S F D Y R
L-V-J-REGION   45..443
atgctgtgggtcccagcactcctgattttcctggctcctgtcacacaggtatcttccaacatgggagaggacaagttgtcagtcacgagggcgactgggtcatctgttgtaatcgattgtgatcttacacaaaactatatccactggtacaaattccaggagggaactgtgccccgacgccttctctactacgatgtctactactcaaaggttgtattggactcaggaatcagtgaagggaaataccacgtttacaaaggcacagggaagagctacacgttcgtaatctcaaacttgcaagaaagtgattctggcacgtactactgtgctgtctggggggacagttcaggctggaagaagatatttggaaaagcaactgagctcatagtagcttcccct M L W V P A L L I F L A P V T Q V S S N M G E D K L S V T R A T G S S V V I D C D L T Q N Y I H W Y K F Q E G T V P R R L L Y Y D V Y Y S K V V L D S G I S E G K Y H V Y K G T G K S Y T F V I S N L Q E S D S G T Y Y C A V W G D S S G W K K I F G K A T E L I V A S P
C C G S Q H S * F S W L L S H R Y L P T W E R T S C Q S R G R L G H L L * S I V I L H K T I S T G T N S R R E L C P D A F S T T M S T T Q R L Y W T Q E S V K G N T T F T K A Q G R A T R S * S Q T C K K V I L A R T T V L S G G T V Q A G R R Y L E K Q L S S * * L P
A V G P S T P D F P G S C H T G I F Q H G R G Q V V S H E G D W V I C C N R L * S Y T K L Y P L V Q I P G G N C A P T P S L L R C L L L K G C I G L R N Q * R E I P R L Q R H R E E L H V R N L K L A R K * F W H V L L C C L G G Q F R L E E D I W K S N * A H S S F P
L-V-REGION   45..383
  putative_limit 3' side
atgctgtgggtcccagcactcctgattttcctggctcctgtcacacaggtatcttccaacatgggagaggacaagttgtcagtcacgagggcgactgggtcatctgttgtaatcgattgtgatcttacacaaaactatatccactggtacaaattccaggagggaactgtgccccgacgccttctctactacgatgtctactactcaaaggttgtattggactcaggaatcagtgaagggaaataccacgtttacaaaggcacagggaagagctacacgttcgtaatctcaaacttgcaagaaagtgattctggcacgtactactgtgctgtctggggg M L W V P A L L I F L A P V T Q V S S N M G E D K L S V T R A T G S S V V I D C D L T Q N Y I H W Y K F Q E G T V P R R L L Y Y D V Y Y S K V V L D S G I S E G K Y H V Y K G T G K S Y T F V I S N L Q E S D S G T Y Y C A V W G
C C G S Q H S * F S W L L S H R Y L P T W E R T S C Q S R G R L G H L L * S I V I L H K T I S T G T N S R R E L C P D A F S T T M S T T Q R L Y W T Q E S V K G N T T F T K A Q G R A T R S * S Q T C K K V I L A R T T V L S G
A V G P S T P D F P G S C H T G I F Q H G R G Q V V S H E G D W V I C C N R L * S Y T K L Y P L V Q I P G G N C A P T P S L L R C L L L K G C I G L R N Q * R E I P R L Q R H R E E L H V R N L K L A R K * F W H V L L C C L G
L-REGION   45..95
atgctgtgggtcccagcactcctgattttcctggctcctgtcacacaggta M L W V P A L L I F L A P V T Q V
C C G S Q H S * F S W L L S H R
A V G P S T P D F P G S C H T G
INIT-CODON   45..47
V-J-C-REGION   96..>507
tcttccaacatgggagaggacaagttgtcagtcacgagggcgactgggtcatctgttgtaatcgattgtgatcttacacaaaactatatccactggtacaaattccaggagggaactgtgccccgacgccttctctactacgatgtctactactcaaaggttgtattggactcaggaatcagtgaagggaaataccacgtttacaaaggcacagggaagagctacacgttcgtaatctcaaacttgcaagaaagtgattctggcacgtactactgtgctgtctggggggacagttcaggctggaagaagatatttggaaaagcaactgagctcatagtagcttcccctgatagagaccttgataaagacatgtctcccaagcccactatgtttcttccttcgattaccgaaa S S N M G E D K L S V T R A T G S S V V I D C D L T Q N Y I H W Y K F Q E G T V P R R L L Y Y D V Y Y S K V V L D S G I S E G K Y H V Y K G T G K S Y T F V I S N L Q E S D S G T Y Y C A V W G D S S G W K K I F G K A T E L I V A S P D R D L D K D M S P K P T M F L P S I T E
L P T W E R T S C Q S R G R L G H L L * S I V I L H K T I S T G T N S R R E L C P D A F S T T M S T T Q R L Y W T Q E S V K G N T T F T K A Q G R A T R S * S Q T C K K V I L A R T T V L S G G T V Q A G R R Y L E K Q L S S * * L P L I E T L I K T C L P S P L C F F L R L P K
F Q H G R G Q V V S H E G D W V I C C N R L * S Y T K L Y P L V Q I P G G N C A P T P S L L R C L L L K G C I G L R N Q * R E I P R L Q R H R E E L H V R N L K L A R K * F W H V L L C C L G G Q F R L E E D I W K S N * A H S S F P * * R P * * R H V S Q A H Y V S S F D Y R
V-J-REGION   96..443
tcttccaacatgggagaggacaagttgtcagtcacgagggcgactgggtcatctgttgtaatcgattgtgatcttacacaaaactatatccactggtacaaattccaggagggaactgtgccccgacgccttctctactacgatgtctactactcaaaggttgtattggactcaggaatcagtgaagggaaataccacgtttacaaaggcacagggaagagctacacgttcgtaatctcaaacttgcaagaaagtgattctggcacgtactactgtgctgtctggggggacagttcaggctggaagaagatatttggaaaagcaactgagctcatagtagcttcccct S S N M G E D K L S V T R A T G S S V V I D C D L T Q N Y I H W Y K F Q E G T V P R R L L Y Y D V Y Y S K V V L D S G I S E G K Y H V Y K G T G K S Y T F V I S N L Q E S D S G T Y Y C A V W G D S S G W K K I F G K A T E L I V A S P
L P T W E R T S C Q S R G R L G H L L * S I V I L H K T I S T G T N S R R E L C P D A F S T T M S T T Q R L Y W T Q E S V K G N T T F T K A Q G R A T R S * S Q T C K K V I L A R T T V L S G G T V Q A G R R Y L E K Q L S S * * L P
F Q H G R G Q V V S H E G D W V I C C N R L * S Y T K L Y P L V Q I P G G N C A P T P S L L R C L L L K G C I G L R N Q * R E I P R L Q R H R E E L H V R N L K L A R K * F W H V L L C C L G G Q F R L E E D I W K S N * A H S S F P
V-REGION   96..383
  gene TRGV2S3
  putative_limit 3' side
tcttccaacatgggagaggacaagttgtcagtcacgagggcgactgggtcatctgttgtaatcgattgtgatcttacacaaaactatatccactggtacaaattccaggagggaactgtgccccgacgccttctctactacgatgtctactactcaaaggttgtattggactcaggaatcagtgaagggaaataccacgtttacaaaggcacagggaagagctacacgttcgtaatctcaaacttgcaagaaagtgattctggcacgtactactgtgctgtctggggg S S N M G E D K L S V T R A T G S S V V I D C D L T Q N Y I H W Y K F Q E G T V P R R L L Y Y D V Y Y S K V V L D S G I S E G K Y H V Y K G T G K S Y T F V I S N L Q E S D S G T Y Y C A V W G
L P T W E R T S C Q S R G R L G H L L * S I V I L H K T I S T G T N S R R E L C P D A F S T T M S T T Q R L Y W T Q E S V K G N T T F T K A Q G R A T R S * S Q T C K K V I L A R T T V L S G
F Q H G R G Q V V S H E G D W V I C C N R L * S Y T K L Y P L V Q I P G G N C A P T P S L L R C L L L K G C I G L R N Q * R E I P R L Q R H R E E L H V R N L K L A R K * F W H V L L C C L G
FR1-IMGT   96..173
  AA_IMGT 1 to 26
tcttccaacatgggagaggacaagttgtcagtcacgagggcgactgggtcatctgttgtaatcgattgtgatcttaca S S N M G E D K L S V T R A T G S S V V I D C D L T
L P T W E R T S C Q S R G R L G H L L * S I V I L
F Q H G R G Q V V S H E G D W V I C C N R L * S Y
1st-CYS   162..164
CDR1-IMGT   174..182
  AA_IMGT AA 27 to 38, AA 29, 30, 31, 32, 33, 34, 35, 36 and 37 are missing
caaaactat Q N Y
K T
K L
FR2-IMGT   183..233
  AA_IMGT 39 to 55
atccactggtacaaattccaggagggaactgtgccccgacgccttctctac I H W Y K F Q E G T V P R R L L Y
S T G T N S R R E L C P D A F S
P L V Q I P G G N C A P T P S L
CONSERVED-TRP   189..191
CDR2-IMGT   234..257
  AA_IMGT AA 56 to 65, AA 60 and 61 are missing
tacgatgtctactactcaaaggtt Y D V Y Y S K V
T M S T T Q R
R C L L L K G
FR3-IMGT   258..371
  AA_IMGT 66 to 104, AA82 missing
gtattggactcaggaatcagtgaagggaaataccacgtttacaaaggcacagggaagagctacacgttcgtaatctcaaacttgcaagaaagtgattctggcacgtactactgt V L D S G I S E G K Y H V Y K G T G K S Y T F V I S N L Q E S D S G T Y Y C
Y W T Q E S V K G N T T F T K A Q G R A T R S * S Q T C K K V I L A R T T
I G L R N Q * R E I P R L Q R H R E E L H V R N L K L A R K * F W H V L L
2nd-CYS   369..371
CDR3-IMGT   372..407
  AA_IMGT AA 105 to 117, AA 111 is missing
gctgtctggggggacagttcaggctggaagaagata A V W G D S S G W K K I
L S G G T V Q A G R R
C L G G Q F R L E E D
JUNCTION   369..410
tgtgctgtctggggggacagttcaggctggaagaagatattt C A V W G D S S G W K K I F
V L S G G T V Q A G R R Y
C C L G G Q F R L E E D I
N-REGION   384..386
J-REGION   387..443
  gene TRGJ3
agttcaggctggaagaagatatttggaaaagcaactgagctcatagtagcttcccct S S G W K K I F G K A T E L I V A S P
V Q A G R R Y L E K Q L S S * * L P
F R L E E D I W K S N * A H S S F P
J-PHE   408..410
C-REGION   444..>507
  IMGT_gene TRGC3
gatagagaccttgataaagacatgtctcccaagcccactatgtttcttccttcgattaccgaaa D R D L D K D M S P K P T M F L P S I T E
I E T L I K T C L P S P L C F F L R L P K
* R P * * R H V S Q A H Y V S S F D Y R
EX1   444..>507
gatagagaccttgataaagacatgtctcccaagcccactatgtttcttccttcgattaccgaaa D R D L D K D M S P K P T M F L P S I T E
I E T L I K T C L P S P L C F F L R L P K
* R P * * R H V S Q A H Y V S S F D Y R

Literature references

[2] 1-507
Hein W.R.
Submitted to the ENA/GenBank/DDBJ databases (15-JUN-1992)
Wayne R. Hein, Basel Institute for Immunology, Grenzacherstrasse, 487, CH-4058 Basel, Switzerland
[3] 1-507
Hein W.R., Dudler L.
Divergent evolution of the T cell repertoire : extensive diversity and developmentally regulated expression of the sheep gamma/delta T cell receptor
EMBO J. 12:712-724 (1993)

Database cross-references

Database Identifiers Relation
ENA Z13001

Sequence

Length : 507 BP
Composition : 134 A; 122 C; 120 G; 131 T; 0 other

     tgtcacatct tctgggaaac tcggtctagc tcgctgtccc aggcatgctg tgggtcccag        60
     cactcctgat tttcctggct cctgtcacac aggtatcttc caacatggga gaggacaagt       120
     tgtcagtcac gagggcgact gggtcatctg ttgtaatcga ttgtgatctt acacaaaact       180
     atatccactg gtacaaattc caggagggaa ctgtgccccg acgccttctc tactacgatg       240
     tctactactc aaaggttgta ttggactcag gaatcagtga agggaaatac cacgtttaca       300
     aaggcacagg gaagagctac acgttcgtaa tctcaaactt gcaagaaagt gattctggca       360
     cgtactactg tgctgtctgg ggggacagtt caggctggaa gaagatattt ggaaaagcaa       420
     ctgagctcat agtagcttcc cctgatagag accttgataa agacatgtct cccaagccca       480
     ctatgtttct tccttcgatt accgaaa                                           507
Created:
23/07/1995
Database development:
Denys CHAUME, Patrice DUROUX, Nelly JOUFFRE
Database scientific officer:
Marie-Paule Lefranc