IMGT/LIGM-DB logo
Database contains
247103 sequences
from 361 species

IMGT/LIGM-DB sequence

Version:
1.2.9
Database release:
LIGMDB_V12
Citing IMGT/LIGM-DB:
Giudicelli, V., Duroux P., Ginestoux C., Folch G., Jabado-Michaloud J., Chaume D., Lefranc M.-P., Nucleic Acids Res., 34:D781-D784 (2006). PMID:16381979 Abstract Full PDF

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Z13003 - Annotation

Sections
Accession number Z13003
Sequence version 1
Secondary accession numbers
IMGT annotation level by annotators
Definition O.aries rearranged T-cell receptor gamma
Species Ovis aries (sheep)
Taxonomy Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Ovis; Ovis aries
Sequence length 632
IMGT/LIGM-DB dates 07-MAY-1996
  18-JAN-2013 (v. 8)

OBTENTION

Specificities
Disease related

IDENTIFICATION

Molecule type cDNA
Configuration type undefined, rearranged
Gene type constant, variable, joining
Molecule entity type L-V-J-C-sequence
Functionality type productive
Chain type TR-Gamma-TRG, TR-Gamma-5-TRGC5
Structure type regular
Location type
Other keywords antigen receptor, Immunoglobulin superfamily (IgSF), T cell receptor (TR), IMGT reference sequence

CLASSIFICATION

IMGT Groups TRGV
IMGT Subgroups TRGV3

DESCRIPTION

L-V-J-C-SEQUENCE   1..>632
  breed White Alpine
  cell_type peripheral lymphocytes
  dev_stage 144 day old fetus
  organism Ovis aries
5'UTR   1..26
L-V-J-C-REGION   27..>632
atgtcaccactggaagcattcacatttttctcgttctgggcttctggacttgggttatcaaaagtggagcaggcccaaatctccccctccacagaagtaaagaaaagtattaccatacattgcaagatagagagcacagatttcgaatcagaagctgtttactggtaccggcagaaaaggcatcaggctttggagcacctggtttatgtgatctccaccacaactgcagctcgacatcaagtagacgggaagaacaaaattgaggcaagaaaagacgctcgaatgttcacttcgacccttacggtaaattttgtagaaaaagaagatgtgggcatttactactgtgctggctggaggaaagggatcaaggtatttggtgaaggaactaagctcgtagtaatacctcctgatagaaggcttgatggagacttgtttcccaagcccactatattttttccttcagttgaggaagtaaaacgccatagtgctggaacacatctttgccttcttcagaattttttccctgatgctattaaggtacaatggaaagaaaagaatggcaatacaattctggaatcccatcagggaaatatcatcaagactaat M S P L E A F T F F S F W A S G L G L S K V E Q A Q I S P S T E V K K S I T I H C K I E S T D F E S E A V Y W Y R Q K R H Q A L E H L V Y V I S T T T A A R H Q V D G K N K I E A R K D A R M F T S T L T V N F V E K E D V G I Y Y C A G W R K G I K V F G E G T K L V V I P P D R R L D G D L F P K P T I F F P S V E E V K R H S A G T H L C L L Q N F F P D A I K V Q W K E K N G N T I L E S H Q G N I I K T N
C H H W K H S H F S R S G L L D L G Y Q K W S R P K S P P P Q K * R K V L P Y I A R * R A Q I S N Q K L F T G T G R K G I R L W S T W F M * S P P Q L Q L D I K * T G R T K L R Q E K T L E C S L R P L R * I L * K K K M W A F T T V L A G G K G S R Y L V K E L S S * * Y L L I E G L M E T C F P S P L Y F F L Q L R K * N A I V L E H I F A F F R I F S L M L L R Y N G K K R M A I Q F W N P I R E I S S R L
V T T G S I H I F L V L G F W T W V I K S G A G P N L P L H R S K E K Y Y H T L Q D R E H R F R I R S C L L V P A E K A S G F G A P G L C D L H H N C S S T S S R R E E Q N * G K K R R S N V H F D P Y G K F C R K R R C G H L L L C W L E E R D Q G I W * R N * A R S N T S * * K A * W R L V S Q A H Y I F S F S * G S K T P * C W N T S L P S S E F F P * C Y * G T M E R K E W Q Y N S G I P S G K Y H Q D *
L-V-J-REGION   27..434
atgtcaccactggaagcattcacatttttctcgttctgggcttctggacttgggttatcaaaagtggagcaggcccaaatctccccctccacagaagtaaagaaaagtattaccatacattgcaagatagagagcacagatttcgaatcagaagctgtttactggtaccggcagaaaaggcatcaggctttggagcacctggtttatgtgatctccaccacaactgcagctcgacatcaagtagacgggaagaacaaaattgaggcaagaaaagacgctcgaatgttcacttcgacccttacggtaaattttgtagaaaaagaagatgtgggcatttactactgtgctggctggaggaaagggatcaaggtatttggtgaaggaactaagctcgtagtaatacctcct M S P L E A F T F F S F W A S G L G L S K V E Q A Q I S P S T E V K K S I T I H C K I E S T D F E S E A V Y W Y R Q K R H Q A L E H L V Y V I S T T T A A R H Q V D G K N K I E A R K D A R M F T S T L T V N F V E K E D V G I Y Y C A G W R K G I K V F G E G T K L V V I P P
C H H W K H S H F S R S G L L D L G Y Q K W S R P K S P P P Q K * R K V L P Y I A R * R A Q I S N Q K L F T G T G R K G I R L W S T W F M * S P P Q L Q L D I K * T G R T K L R Q E K T L E C S L R P L R * I L * K K K M W A F T T V L A G G K G S R Y L V K E L S S * * Y L
V T T G S I H I F L V L G F W T W V I K S G A G P N L P L H R S K E K Y Y H T L Q D R E H R F R I R S C L L V P A E K A S G F G A P G L C D L H H N C S S T S S R R E E Q N * G K K R R S N V H F D P Y G K F C R K R R C G H L L L C W L E E R D Q G I W * R N * A R S N T S
L-V-REGION   27..383
  putative_limit 3' side
atgtcaccactggaagcattcacatttttctcgttctgggcttctggacttgggttatcaaaagtggagcaggcccaaatctccccctccacagaagtaaagaaaagtattaccatacattgcaagatagagagcacagatttcgaatcagaagctgtttactggtaccggcagaaaaggcatcaggctttggagcacctggtttatgtgatctccaccacaactgcagctcgacatcaagtagacgggaagaacaaaattgaggcaagaaaagacgctcgaatgttcacttcgacccttacggtaaattttgtagaaaaagaagatgtgggcatttactactgtgctggctggagg M S P L E A F T F F S F W A S G L G L S K V E Q A Q I S P S T E V K K S I T I H C K I E S T D F E S E A V Y W Y R Q K R H Q A L E H L V Y V I S T T T A A R H Q V D G K N K I E A R K D A R M F T S T L T V N F V E K E D V G I Y Y C A G W R
C H H W K H S H F S R S G L L D L G Y Q K W S R P K S P P P Q K * R K V L P Y I A R * R A Q I S N Q K L F T G T G R K G I R L W S T W F M * S P P Q L Q L D I K * T G R T K L R Q E K T L E C S L R P L R * I L * K K K M W A F T T V L A G
V T T G S I H I F L V L G F W T W V I K S G A G P N L P L H R S K E K Y Y H T L Q D R E H R F R I R S C L L V P A E K A S G F G A P G L C D L H H N C S S T S S R R E E Q N * G K K R R S N V H F D P Y G K F C R K R R C G H L L L C W L E
L-REGION   27..80
atgtcaccactggaagcattcacatttttctcgttctgggcttctggacttggg M S P L E A F T F F S F W A S G L G
C H H W K H S H F S R S G L L D L
V T T G S I H I F L V L G F W T W
INIT-CODON   27..29
V-J-C-REGION   81..>632
ttatcaaaagtggagcaggcccaaatctccccctccacagaagtaaagaaaagtattaccatacattgcaagatagagagcacagatttcgaatcagaagctgtttactggtaccggcagaaaaggcatcaggctttggagcacctggtttatgtgatctccaccacaactgcagctcgacatcaagtagacgggaagaacaaaattgaggcaagaaaagacgctcgaatgttcacttcgacccttacggtaaattttgtagaaaaagaagatgtgggcatttactactgtgctggctggaggaaagggatcaaggtatttggtgaaggaactaagctcgtagtaatacctcctgatagaaggcttgatggagacttgtttcccaagcccactatattttttccttcagttgaggaagtaaaacgccatagtgctggaacacatctttgccttcttcagaattttttccctgatgctattaaggtacaatggaaagaaaagaatggcaatacaattctggaatcccatcagggaaatatcatcaagactaat L S K V E Q A Q I S P S T E V K K S I T I H C K I E S T D F E S E A V Y W Y R Q K R H Q A L E H L V Y V I S T T T A A R H Q V D G K N K I E A R K D A R M F T S T L T V N F V E K E D V G I Y Y C A G W R K G I K V F G E G T K L V V I P P D R R L D G D L F P K P T I F F P S V E E V K R H S A G T H L C L L Q N F F P D A I K V Q W K E K N G N T I L E S H Q G N I I K T N
Y Q K W S R P K S P P P Q K * R K V L P Y I A R * R A Q I S N Q K L F T G T G R K G I R L W S T W F M * S P P Q L Q L D I K * T G R T K L R Q E K T L E C S L R P L R * I L * K K K M W A F T T V L A G G K G S R Y L V K E L S S * * Y L L I E G L M E T C F P S P L Y F F L Q L R K * N A I V L E H I F A F F R I F S L M L L R Y N G K K R M A I Q F W N P I R E I S S R L
I K S G A G P N L P L H R S K E K Y Y H T L Q D R E H R F R I R S C L L V P A E K A S G F G A P G L C D L H H N C S S T S S R R E E Q N * G K K R R S N V H F D P Y G K F C R K R R C G H L L L C W L E E R D Q G I W * R N * A R S N T S * * K A * W R L V S Q A H Y I F S F S * G S K T P * C W N T S L P S S E F F P * C Y * G T M E R K E W Q Y N S G I P S G K Y H Q D *
V-J-REGION   81..434
ttatcaaaagtggagcaggcccaaatctccccctccacagaagtaaagaaaagtattaccatacattgcaagatagagagcacagatttcgaatcagaagctgtttactggtaccggcagaaaaggcatcaggctttggagcacctggtttatgtgatctccaccacaactgcagctcgacatcaagtagacgggaagaacaaaattgaggcaagaaaagacgctcgaatgttcacttcgacccttacggtaaattttgtagaaaaagaagatgtgggcatttactactgtgctggctggaggaaagggatcaaggtatttggtgaaggaactaagctcgtagtaatacctcct L S K V E Q A Q I S P S T E V K K S I T I H C K I E S T D F E S E A V Y W Y R Q K R H Q A L E H L V Y V I S T T T A A R H Q V D G K N K I E A R K D A R M F T S T L T V N F V E K E D V G I Y Y C A G W R K G I K V F G E G T K L V V I P P
Y Q K W S R P K S P P P Q K * R K V L P Y I A R * R A Q I S N Q K L F T G T G R K G I R L W S T W F M * S P P Q L Q L D I K * T G R T K L R Q E K T L E C S L R P L R * I L * K K K M W A F T T V L A G G K G S R Y L V K E L S S * * Y L
I K S G A G P N L P L H R S K E K Y Y H T L Q D R E H R F R I R S C L L V P A E K A S G F G A P G L C D L H H N C S S T S S R R E E Q N * G K K R R S N V H F D P Y G K F C R K R R C G H L L L C W L E E R D Q G I W * R N * A R S N T S
V-REGION   81..383
  gene TRGV3
  putative_limit 3' side
ttatcaaaagtggagcaggcccaaatctccccctccacagaagtaaagaaaagtattaccatacattgcaagatagagagcacagatttcgaatcagaagctgtttactggtaccggcagaaaaggcatcaggctttggagcacctggtttatgtgatctccaccacaactgcagctcgacatcaagtagacgggaagaacaaaattgaggcaagaaaagacgctcgaatgttcacttcgacccttacggtaaattttgtagaaaaagaagatgtgggcatttactactgtgctggctggagg L S K V E Q A Q I S P S T E V K K S I T I H C K I E S T D F E S E A V Y W Y R Q K R H Q A L E H L V Y V I S T T T A A R H Q V D G K N K I E A R K D A R M F T S T L T V N F V E K E D V G I Y Y C A G W R
Y Q K W S R P K S P P P Q K * R K V L P Y I A R * R A Q I S N Q K L F T G T G R K G I R L W S T W F M * S P P Q L Q L D I K * T G R T K L R Q E K T L E C S L R P L R * I L * K K K M W A F T T V L A G
I K S G A G P N L P L H R S K E K Y Y H T L Q D R E H R F R I R S C L L V P A E K A S G F G A P G L C D L H H N C S S T S S R R E E Q N * G K K R R S N V H F D P Y G K F C R K R R C G H L L L C W L E
FR1-IMGT   81..158
  AA_IMGT 1 to 26
ttatcaaaagtggagcaggcccaaatctccccctccacagaagtaaagaaaagtattaccatacattgcaagatagag L S K V E Q A Q I S P S T E V K K S I T I H C K I E
Y Q K W S R P K S P P P Q K * R K V L P Y I A R *
I K S G A G P N L P L H R S K E K Y Y H T L Q D R
1st-CYS   147..149
CDR1-IMGT   159..182
  AA_IMGT AA 27 to 38, AA 31, 32, 33 and 34 are missing
agcacagatttcgaatcagaagct S T D F E S E A
A Q I S N Q K
H R F R I R S
FR2-IMGT   183..233
  AA_IMGT 39 to 55
gtttactggtaccggcagaaaaggcatcaggctttggagcacctggtttat V Y W Y R Q K R H Q A L E H L V Y
F T G T G R K G I R L W S T W F
L L V P A E K A S G F G A P G L
CONSERVED-TRP   189..191
CDR2-IMGT   234..254
  AA_IMGT AA 56 to 65, AA 60, 61 and 62 are missing
gtgatctccaccacaactgca V I S T T T A
* S P P Q L
D L H H N C
FR3-IMGT   255..371
  AA_IMGT 66 to 104
gctcgacatcaagtagacgggaagaacaaaattgaggcaagaaaagacgctcgaatgttcacttcgacccttacggtaaattttgtagaaaaagaagatgtgggcatttactactgt A R H Q V D G K N K I E A R K D A R M F T S T L T V N F V E K E D V G I Y Y C
L D I K * T G R T K L R Q E K T L E C S L R P L R * I L * K K K M W A F T T
S T S S R R E E Q N * G K K R R S N V H F D P Y G K F C R K R R C G H L L L
2nd-CYS   369..371
CDR3-IMGT   372..398
  AA_IMGT AA 105 to 117, AA 110, 111, 112 and 113 are missing
gctggctggaggaaagggatcaaggta A G W R K G I K V
L A G G K G S R
W L E E R D Q G
JUNCTION   369..401
tgtgctggctggaggaaagggatcaaggtattt C A G W R K G I K V F
V L A G G K G S R Y
C W L E E R D Q G I
N-REGION   384..386
J-REGION   387..434
  gene TRGJ5
gggatcaaggtatttggtgaaggaactaagctcgtagtaatacctcct G I K V F G E G T K L V V I P P
G S R Y L V K E L S S * * Y L
D Q G I W * R N * A R S N T S
J-PHE   399..401
C-REGION   435..>632
  IMGT_gene TRGC5
gatagaaggcttgatggagacttgtttcccaagcccactatattttttccttcagttgaggaagtaaaacgccatagtgctggaacacatctttgccttcttcagaattttttccctgatgctattaaggtacaatggaaagaaaagaatggcaatacaattctggaatcccatcagggaaatatcatcaagactaat D R R L D G D L F P K P T I F F P S V E E V K R H S A G T H L C L L Q N F F P D A I K V Q W K E K N G N T I L E S H Q G N I I K T N
I E G L M E T C F P S P L Y F F L Q L R K * N A I V L E H I F A F F R I F S L M L L R Y N G K K R M A I Q F W N P I R E I S S R L
* K A * W R L V S Q A H Y I F S F S * G S K T P * C W N T S L P S S E F F P * C Y * G T M E R K E W Q Y N S G I P S G K Y H Q D *
EX1   435..>632
gatagaaggcttgatggagacttgtttcccaagcccactatattttttccttcagttgaggaagtaaaacgccatagtgctggaacacatctttgccttcttcagaattttttccctgatgctattaaggtacaatggaaagaaaagaatggcaatacaattctggaatcccatcagggaaatatcatcaagactaat D R R L D G D L F P K P T I F F P S V E E V K R H S A G T H L C L L Q N F F P D A I K V Q W K E K N G N T I L E S H Q G N I I K T N
I E G L M E T C F P S P L Y F F L Q L R K * N A I V L E H I F A F F R I F S L M L L R Y N G K K R M A I Q F W N P I R E I S S R L
* K A * W R L V S Q A H Y I F S F S * G S K T P * C W N T S L P S S E F F P * C Y * G T M E R K E W Q Y N S G I P S G K Y H Q D *

Literature references

[2] 1-632
Hein W.R.
Submitted to the ENA/GenBank/DDBJ databases (15-JUN-1992)
Wayne R. Hein, Basel Institute for Immunology, Grenzacherstrasse, 487, CH-4058 Basel, Switzerland
[3] 1-632
Hein W.R., Dudler L.
Divergent evolution of the T cell repertoire : extensive diversity and developmentally regulated expression of the sheep gamma/delta T cell receptor
EMBO J. 12:712-724 (1993)

Database cross-references

Database Identifiers Relation
ENA Z13003

Sequence

Length : 632 BP
Composition : 198 A; 130 C; 144 G; 160 T; 0 other

     tttgagcaca cagcccagcg gacaggatgt caccactgga agcattcaca tttttctcgt        60
     tctgggcttc tggacttggg ttatcaaaag tggagcaggc ccaaatctcc ccctccacag       120
     aagtaaagaa aagtattacc atacattgca agatagagag cacagatttc gaatcagaag       180
     ctgtttactg gtaccggcag aaaaggcatc aggctttgga gcacctggtt tatgtgatct       240
     ccaccacaac tgcagctcga catcaagtag acgggaagaa caaaattgag gcaagaaaag       300
     acgctcgaat gttcacttcg acccttacgg taaattttgt agaaaaagaa gatgtgggca       360
     tttactactg tgctggctgg aggaaaggga tcaaggtatt tggtgaagga actaagctcg       420
     tagtaatacc tcctgataga aggcttgatg gagacttgtt tcccaagccc actatatttt       480
     ttccttcagt tgaggaagta aaacgccata gtgctggaac acatctttgc cttcttcaga       540
     attttttccc tgatgctatt aaggtacaat ggaaagaaaa gaatggcaat acaattctgg       600
     aatcccatca gggaaatatc atcaagacta at                                     632
Created:
23/07/1995
Database development:
Denys CHAUME, Patrice DUROUX, Nelly JOUFFRE
Database scientific officer:
Marie-Paule Lefranc