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Database contains
247103 sequences
from 361 species

IMGT/LIGM-DB sequence

Version:
1.2.9
Database release:
LIGMDB_V12
Citing IMGT/LIGM-DB:
Giudicelli, V., Duroux P., Ginestoux C., Folch G., Jabado-Michaloud J., Chaume D., Lefranc M.-P., Nucleic Acids Res., 34:D781-D784 (2006). PMID:16381979 Abstract Full PDF

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Z13004 - Annotation

Sections
Accession number Z13004
Sequence version 1
Secondary accession numbers
IMGT annotation level by annotators
Definition O.aries rearranged T-cell receptor gamma
Species Ovis aries (sheep)
Taxonomy Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Ovis; Ovis aries
Sequence length 504
IMGT/LIGM-DB dates 07-MAY-1996
  05-MAR-2013 (v. 11)

OBTENTION

Specificities
Disease related

IDENTIFICATION

Molecule type cDNA
Configuration type undefined, rearranged
Gene type constant, variable, joining
Molecule entity type L-V-J-C-sequence
Functionality type productive
Chain type TR-Gamma-TRG, TR-Gamma-5-TRGC5
Structure type regular
Location type
Other keywords antigen receptor, Immunoglobulin superfamily (IgSF), T cell receptor (TR), IMGT reference sequence

CLASSIFICATION

IMGT Groups TRGV
IMGT Subgroups TRGV4

DESCRIPTION

L-V-J-C-SEQUENCE   <1..>504
  breed White Alpine
  cell_type peripheral lymphocytes
  db_xref taxon:9940
  dev_stage 144 day old fetus
  mol_type mRNA
  organism Ovis aries
  protein_id CAA78348.1
V-J-C-REGION   <1..>504
tctacccgaagaccagacagaacagtgcacataagttgcaagctgtcaggggttcccctggagaatgccgttgtgcactggtatcaagagaaagaaggggagcccctgaaacgaatcctttatggctcagctaacagttataagctggacaaacctaattcccgtttggagatggataacaaaaagaatggaatcttttacctgataatcaataacgttgtcaagtccgatgaagccacttactactgtgcctgctgggggatcaaggtatttggtgaaggaactaagctcgtagtaatacctcctgatagaaggcttgatggagacttgtttcccaagcccactatattttttccttcagttgaggaagtaaaacgccatagtgctggaacacatctttgccttcttcagaattttttccctgatgctattaaggtacaatggaaagaaaagaatggcaatacaattctggaatcccatcagggaaatatcatcaagactaat S T R R P D R T V H I S C K L S G V P L E N A V V H W Y Q E K E G E P L K R I L Y G S A N S Y K L D K P N S R L E M D N K K N G I F Y L I I N N V V K S D E A T Y Y C A C W G I K V F G E G T K L V V I P P D R R L D G D L F P K P T I F F P S V E E V K R H S A G T H L C L L Q N F F P D A I K V Q W K E K N G N T I L E S H Q G N I I K T N
L P E D Q T E Q C T * V A S C Q G F P W R M P L C T G I K R K K G S P * N E S F M A Q L T V I S W T N L I P V W R W I T K R M E S F T * * S I T L S S P M K P L T T V P A G G S R Y L V K E L S S * * Y L L I E G L M E T C F P S P L Y F F L Q L R K * N A I V L E H I F A F F R I F S L M L L R Y N G K K R M A I Q F W N P I R E I S S R L
Y P K T R Q N S A H K L Q A V R G S P G E C R C A L V S R E R R G A P E T N P L W L S * Q L * A G Q T * F P F G D G * Q K E W N L L P D N Q * R C Q V R * S H L L L C L L G D Q G I W * R N * A R S N T S * * K A * W R L V S Q A H Y I F S F S * G S K T P * C W N T S L P S S E F F P * C Y * G T M E R K E W Q Y N S G I P S G K Y H Q D *
V-J-REGION   <1..306
tctacccgaagaccagacagaacagtgcacataagttgcaagctgtcaggggttcccctggagaatgccgttgtgcactggtatcaagagaaagaaggggagcccctgaaacgaatcctttatggctcagctaacagttataagctggacaaacctaattcccgtttggagatggataacaaaaagaatggaatcttttacctgataatcaataacgttgtcaagtccgatgaagccacttactactgtgcctgctgggggatcaaggtatttggtgaaggaactaagctcgtagtaatacctcct S T R R P D R T V H I S C K L S G V P L E N A V V H W Y Q E K E G E P L K R I L Y G S A N S Y K L D K P N S R L E M D N K K N G I F Y L I I N N V V K S D E A T Y Y C A C W G I K V F G E G T K L V V I P P
L P E D Q T E Q C T * V A S C Q G F P W R M P L C T G I K R K K G S P * N E S F M A Q L T V I S W T N L I P V W R W I T K R M E S F T * * S I T L S S P M K P L T T V P A G G S R Y L V K E L S S * * Y L
Y P K T R Q N S A H K L Q A V R G S P G E C R C A L V S R E R R G A P E T N P L W L S * Q L * A G Q T * F P F G D G * Q K E W N L L P D N Q * R C Q V R * S H L L L C L L G D Q G I W * R N * A R S N T S
V-REGION   <1..258
  IMGT_gene TRGV4
  putative_limit 3' side
tctacccgaagaccagacagaacagtgcacataagttgcaagctgtcaggggttcccctggagaatgccgttgtgcactggtatcaagagaaagaaggggagcccctgaaacgaatcctttatggctcagctaacagttataagctggacaaacctaattcccgtttggagatggataacaaaaagaatggaatcttttacctgataatcaataacgttgtcaagtccgatgaagccacttactactgtgcctgctgg S T R R P D R T V H I S C K L S G V P L E N A V V H W Y Q E K E G E P L K R I L Y G S A N S Y K L D K P N S R L E M D N K K N G I F Y L I I N N V V K S D E A T Y Y C A C W
L P E D Q T E Q C T * V A S C Q G F P W R M P L C T G I K R K K G S P * N E S F M A Q L T V I S W T N L I P V W R W I T K R M E S F T * * S I T L S S P M K P L T T V P A
Y P K T R Q N S A H K L Q A V R G S P G E C R C A L V S R E R R G A P E T N P L W L S * Q L * A G Q T * F P F G D G * Q K E W N L L P D N Q * R C Q V R * S H L L L C L L
FR1-IMGT   <1..48
  AA_IMGT 11 to 26
tctacccgaagaccagacagaacagtgcacataagttgcaagctgtca S T R R P D R T V H I S C K L S
L P E D Q T E Q C T * V A S C
Y P K T R Q N S A H K L Q A V
1st-CYS   37..39
CDR1-IMGT   49..72
  AA_IMGT AA 27 to 38, AA 31, 32, 33 and 34 are missing
ggggttcccctggagaatgccgtt G V P L E N A V
G F P W R M P
G S P G E C R
FR2-IMGT   73..123
  AA_IMGT 39 to 55
gtgcactggtatcaagagaaagaaggggagcccctgaaacgaatcctttat V H W Y Q E K E G E P L K R I L Y
C T G I K R K K G S P * N E S F
A L V S R E R R G A P E T N P L
CONSERVED-TRP   79..81
CDR2-IMGT   124..141
  AA_IMGT AA 56 to 65, AA 59, 60, 61 and 62 are missing
ggctcagctaacagttat G S A N S Y
A Q L T V
L S * Q L
FR3-IMGT   142..249
  AA_IMGT 66 to 104, AA81, 82, 83 missing
aagctggacaaacctaattcccgtttggagatggataacaaaaagaatggaatcttttacctgataatcaataacgttgtcaagtccgatgaagccacttactactgt K L D K P N S R L E M D N K K N G I F Y L I I N N V V K S D E A T Y Y C
S W T N L I P V W R W I T K R M E S F T * * S I T L S S P M K P L T T
A G Q T * F P F G D G * Q K E W N L L P D N Q * R C Q V R * S H L L L
2nd-CYS   247..249
CDR3-IMGT   250..270
  AA_IMGT AA 105 to 117, AA 109, 110, 111, 112, 113 and 114 are missing
gcctgctgggggatcaaggta A C W G I K V
P A G G S R
L L G D Q G
JUNCTION   247..273
tgtgcctgctgggggatcaaggtattt C A C W G I K V F
V P A G G S R Y
C L L G D Q G I
J-REGION   259..306
  gene TRGJ5
gggatcaaggtatttggtgaaggaactaagctcgtagtaatacctcct G I K V F G E G T K L V V I P P
G S R Y L V K E L S S * * Y L
D Q G I W * R N * A R S N T S
J-PHE   271..273
C-REGION   307..>504
  IMGT_gene TRGC5
gatagaaggcttgatggagacttgtttcccaagcccactatattttttccttcagttgaggaagtaaaacgccatagtgctggaacacatctttgccttcttcagaattttttccctgatgctattaaggtacaatggaaagaaaagaatggcaatacaattctggaatcccatcagggaaatatcatcaagactaat D R R L D G D L F P K P T I F F P S V E E V K R H S A G T H L C L L Q N F F P D A I K V Q W K E K N G N T I L E S H Q G N I I K T N
I E G L M E T C F P S P L Y F F L Q L R K * N A I V L E H I F A F F R I F S L M L L R Y N G K K R M A I Q F W N P I R E I S S R L
* K A * W R L V S Q A H Y I F S F S * G S K T P * C W N T S L P S S E F F P * C Y * G T M E R K E W Q Y N S G I P S G K Y H Q D *
EX1   307..>504
gatagaaggcttgatggagacttgtttcccaagcccactatattttttccttcagttgaggaagtaaaacgccatagtgctggaacacatctttgccttcttcagaattttttccctgatgctattaaggtacaatggaaagaaaagaatggcaatacaattctggaatcccatcagggaaatatcatcaagactaat D R R L D G D L F P K P T I F F P S V E E V K R H S A G T H L C L L Q N F F P D A I K V Q W K E K N G N T I L E S H Q G N I I K T N
I E G L M E T C F P S P L Y F F L Q L R K * N A I V L E H I F A F F R I F S L M L L R Y N G K K R M A I Q F W N P I R E I S S R L
* K A * W R L V S Q A H Y I F S F S * G S K T P * C W N T S L P S S E F F P * C Y * G T M E R K E W Q Y N S G I P S G K Y H Q D *

Literature references

[2] 1-504
Hein W.R.
Submitted to the ENA/GenBank/DDBJ databases (15-JUN-1992)
Wayne R. Hein, Basel Institute for Immunology, Grenzacherstrasse, 487, CH-4058 Basel, Switzerland
[3] 1-504
Hein W.R., Dudler L.
Divergent evolution of the T cell repertoire : extensive diversity and developmentally regulated expression of the sheep gamma/delta T cell receptor
EMBO J. 12:712-724 (1993)

Database cross-references

Database Identifiers Relation
ENA Z13004

Sequence

Length : 504 BP
Composition : 158 A; 103 C; 112 G; 131 T; 0 other

     tctacccgaa gaccagacag aacagtgcac ataagttgca agctgtcagg ggttcccctg        60
     gagaatgccg ttgtgcactg gtatcaagag aaagaagggg agcccctgaa acgaatcctt       120
     tatggctcag ctaacagtta taagctggac aaacctaatt cccgtttgga gatggataac       180
     aaaaagaatg gaatctttta cctgataatc aataacgttg tcaagtccga tgaagccact       240
     tactactgtg cctgctgggg gatcaaggta tttggtgaag gaactaagct cgtagtaata       300
     cctcctgata gaaggcttga tggagacttg tttcccaagc ccactatatt ttttccttca       360
     gttgaggaag taaaacgcca tagtgctgga acacatcttt gccttcttca gaattttttc       420
     cctgatgcta ttaaggtaca atggaaagaa aagaatggca atacaattct ggaatcccat       480
     cagggaaata tcatcaagac taat                                              504
Created:
23/07/1995
Database development:
Denys CHAUME, Patrice DUROUX, Nelly JOUFFRE
Database scientific officer:
Marie-Paule Lefranc