IMGT/LIGM-DB logo
Database contains
247103 sequences
from 361 species

IMGT/LIGM-DB sequence

Version:
1.2.9
Database release:
LIGMDB_V12
Citing IMGT/LIGM-DB:
Giudicelli, V., Duroux P., Ginestoux C., Folch G., Jabado-Michaloud J., Chaume D., Lefranc M.-P., Nucleic Acids Res., 34:D781-D784 (2006). PMID:16381979 Abstract Full PDF

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Z13007 - Annotation

Sections
Accession number Z13007
Sequence version 1
Secondary accession numbers
IMGT annotation level by annotators
Definition O.aries rearranged T-cell receptor gamma
Species Ovis aries (sheep)
Taxonomy Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Ovis; Ovis aries
Sequence length 708
IMGT/LIGM-DB dates 07-MAY-1996
  18-JAN-2013 (v. 6)

OBTENTION

Specificities
Disease related

IDENTIFICATION

Molecule type cDNA
Configuration type undefined, rearranged
Gene type constant, variable, joining
Molecule entity type L-V-J-C-sequence
Functionality type productive
Chain type TR-Gamma-TRG, TR-Gamma-4-TRGC4
Structure type regular
Location type
Other keywords antigen receptor, Immunoglobulin superfamily (IgSF), T cell receptor (TR), IMGT reference sequence

CLASSIFICATION

IMGT Groups TRGV
IMGT Subgroups TRGV6

DESCRIPTION

L-V-J-C-SEQUENCE   1..>708
  breed White Alpine
  cell_type peripheral lymphocytes
  dev_stage 61 day old fetus
  organism Ovis aries
5'UTR   1..78
L-V-J-C-REGION   79..>708
atgggcttttccctcggggcagagggcagagccgtgctaggccgcctggccctcctctgggccctcgtggttccaggtatccagcaggagatcaggctgtcacagcggtccgtgatggtggggtccgcgggtggagctgtgactatgccttgccatgtcagtaggtctgtggattacgtccactggttccgccagctggagggccaggcccctgagaggcttctcaatctagccttgtccaagcgggatgtgcagtgggattcggtcctaggaggtgataaagtcagcgcagcccgcggcggggatggcaagagctgcaccatgtccttgaggaagctggcgaagagcgatgagggactgtactactgtgctgcctgggattacaatttaaactacatgatctttggtggaggaacaaaagttttcgtccaagataaaaaccttcctacagatatcatccccaaacccacaatttttcttccttcaattaatgaggtcaaccatcaacagactgcaacatatctttgtctcctggaaaattttttccctgacgttattaaggtttcttggaaagagaagaatggcaaaagagttctgccatcccagcacggaaataccatgaagaccaat M G F S L G A E G R A V L G R L A L L W A L V V P G I Q Q E I R L S Q R S V M V G S A G G A V T M P C H V S R S V D Y V H W F R Q L E G Q A P E R L L N L A L S K R D V Q W D S V L G G D K V S A A R G G D G K S C T M S L R K L A K S D E G L Y Y C A A W D Y N L N Y M I F G G G T K V F V Q D K N L P T D I I P K P T I F L P S I N E V N H Q Q T A T Y L C L L E N F F P D V I K V S W K E K N G K R V L P S Q H G N T M K T N
W A F P S G Q R A E P C * A A W P S S G P S W F Q V S S R R S G C H S G P * W W G P R V E L * L C L A M S V G L W I T S T G S A S W R A R P L R G F S I * P C P S G M C S G I R S * E V I K S A Q P A A G M A R A A P C P * G S W R R A M R D C T T V L P G I T I * T T * S L V E E Q K F S S K I K T F L Q I S S P N P Q F F F L Q L M R S T I N R L Q H I F V S W K I F S L T L L R F L G K R R M A K E F C H P S T E I P * R P
G L F P R G R G Q S R A R P P G P P L G P R G S R Y P A G D Q A V T A V R D G G V R G W S C D Y A L P C Q * V C G L R P L V P P A G G P G P * E A S Q S S L V Q A G C A V G F G P R R * * S Q R S P R R G W Q E L H H V L E E A G E E R * G T V L L C C L G L Q F K L H D L W W R N K S F R P R * K P S Y R Y H P Q T H N F S S F N * * G Q P S T D C N I S L S P G K F F P * R Y * G F L E R E E W Q K S S A I P A R K Y H E D Q
L-V-J-REGION   79..510
atgggcttttccctcggggcagagggcagagccgtgctaggccgcctggccctcctctgggccctcgtggttccaggtatccagcaggagatcaggctgtcacagcggtccgtgatggtggggtccgcgggtggagctgtgactatgccttgccatgtcagtaggtctgtggattacgtccactggttccgccagctggagggccaggcccctgagaggcttctcaatctagccttgtccaagcgggatgtgcagtgggattcggtcctaggaggtgataaagtcagcgcagcccgcggcggggatggcaagagctgcaccatgtccttgaggaagctggcgaagagcgatgagggactgtactactgtgctgcctgggattacaatttaaactacatgatctttggtggaggaacaaaagttttcgtccaa M G F S L G A E G R A V L G R L A L L W A L V V P G I Q Q E I R L S Q R S V M V G S A G G A V T M P C H V S R S V D Y V H W F R Q L E G Q A P E R L L N L A L S K R D V Q W D S V L G G D K V S A A R G G D G K S C T M S L R K L A K S D E G L Y Y C A A W D Y N L N Y M I F G G G T K V F V Q
W A F P S G Q R A E P C * A A W P S S G P S W F Q V S S R R S G C H S G P * W W G P R V E L * L C L A M S V G L W I T S T G S A S W R A R P L R G F S I * P C P S G M C S G I R S * E V I K S A Q P A A G M A R A A P C P * G S W R R A M R D C T T V L P G I T I * T T * S L V E E Q K F S S
G L F P R G R G Q S R A R P P G P P L G P R G S R Y P A G D Q A V T A V R D G G V R G W S C D Y A L P C Q * V C G L R P L V P P A G G P G P * E A S Q S S L V Q A G C A V G F G P R R * * S Q R S P R R G W Q E L H H V L E E A G E E R * G T V L L C C L G L Q F K L H D L W W R N K S F R P
L-V-REGION   79..459
  putative_limit 3' side
atgggcttttccctcggggcagagggcagagccgtgctaggccgcctggccctcctctgggccctcgtggttccaggtatccagcaggagatcaggctgtcacagcggtccgtgatggtggggtccgcgggtggagctgtgactatgccttgccatgtcagtaggtctgtggattacgtccactggttccgccagctggagggccaggcccctgagaggcttctcaatctagccttgtccaagcgggatgtgcagtgggattcggtcctaggaggtgataaagtcagcgcagcccgcggcggggatggcaagagctgcaccatgtccttgaggaagctggcgaagagcgatgagggactgtactactgtgctgcctgggat M G F S L G A E G R A V L G R L A L L W A L V V P G I Q Q E I R L S Q R S V M V G S A G G A V T M P C H V S R S V D Y V H W F R Q L E G Q A P E R L L N L A L S K R D V Q W D S V L G G D K V S A A R G G D G K S C T M S L R K L A K S D E G L Y Y C A A W D
W A F P S G Q R A E P C * A A W P S S G P S W F Q V S S R R S G C H S G P * W W G P R V E L * L C L A M S V G L W I T S T G S A S W R A R P L R G F S I * P C P S G M C S G I R S * E V I K S A Q P A A G M A R A A P C P * G S W R R A M R D C T T V L P G
G L F P R G R G Q S R A R P P G P P L G P R G S R Y P A G D Q A V T A V R D G G V R G W S C D Y A L P C Q * V C G L R P L V P P A G G P G P * E A S Q S S L V Q A G C A V G F G P R R * * S Q R S P R R G W Q E L H H V L E E A G E E R * G T V L L C C L G
L-REGION   79..162
atgggcttttccctcggggcagagggcagagccgtgctaggccgcctggccctcctctgggccctcgtggttccaggtatccag M G F S L G A E G R A V L G R L A L L W A L V V P G I Q
W A F P S G Q R A E P C * A A W P S S G P S W F Q V S
G L F P R G R G Q S R A R P P G P P L G P R G S R Y P
INIT-CODON   79..81
V-J-C-REGION   163..>708
caggagatcaggctgtcacagcggtccgtgatggtggggtccgcgggtggagctgtgactatgccttgccatgtcagtaggtctgtggattacgtccactggttccgccagctggagggccaggcccctgagaggcttctcaatctagccttgtccaagcgggatgtgcagtgggattcggtcctaggaggtgataaagtcagcgcagcccgcggcggggatggcaagagctgcaccatgtccttgaggaagctggcgaagagcgatgagggactgtactactgtgctgcctgggattacaatttaaactacatgatctttggtggaggaacaaaagttttcgtccaagataaaaaccttcctacagatatcatccccaaacccacaatttttcttccttcaattaatgaggtcaaccatcaacagactgcaacatatctttgtctcctggaaaattttttccctgacgttattaaggtttcttggaaagagaagaatggcaaaagagttctgccatcccagcacggaaataccatgaagaccaat Q E I R L S Q R S V M V G S A G G A V T M P C H V S R S V D Y V H W F R Q L E G Q A P E R L L N L A L S K R D V Q W D S V L G G D K V S A A R G G D G K S C T M S L R K L A K S D E G L Y Y C A A W D Y N L N Y M I F G G G T K V F V Q D K N L P T D I I P K P T I F L P S I N E V N H Q Q T A T Y L C L L E N F F P D V I K V S W K E K N G K R V L P S Q H G N T M K T N
R R S G C H S G P * W W G P R V E L * L C L A M S V G L W I T S T G S A S W R A R P L R G F S I * P C P S G M C S G I R S * E V I K S A Q P A A G M A R A A P C P * G S W R R A M R D C T T V L P G I T I * T T * S L V E E Q K F S S K I K T F L Q I S S P N P Q F F F L Q L M R S T I N R L Q H I F V S W K I F S L T L L R F L G K R R M A K E F C H P S T E I P * R P
G D Q A V T A V R D G G V R G W S C D Y A L P C Q * V C G L R P L V P P A G G P G P * E A S Q S S L V Q A G C A V G F G P R R * * S Q R S P R R G W Q E L H H V L E E A G E E R * G T V L L C C L G L Q F K L H D L W W R N K S F R P R * K P S Y R Y H P Q T H N F S S F N * * G Q P S T D C N I S L S P G K F F P * R Y * G F L E R E E W Q K S S A I P A R K Y H E D Q
V-J-REGION   163..510
caggagatcaggctgtcacagcggtccgtgatggtggggtccgcgggtggagctgtgactatgccttgccatgtcagtaggtctgtggattacgtccactggttccgccagctggagggccaggcccctgagaggcttctcaatctagccttgtccaagcgggatgtgcagtgggattcggtcctaggaggtgataaagtcagcgcagcccgcggcggggatggcaagagctgcaccatgtccttgaggaagctggcgaagagcgatgagggactgtactactgtgctgcctgggattacaatttaaactacatgatctttggtggaggaacaaaagttttcgtccaa Q E I R L S Q R S V M V G S A G G A V T M P C H V S R S V D Y V H W F R Q L E G Q A P E R L L N L A L S K R D V Q W D S V L G G D K V S A A R G G D G K S C T M S L R K L A K S D E G L Y Y C A A W D Y N L N Y M I F G G G T K V F V Q
R R S G C H S G P * W W G P R V E L * L C L A M S V G L W I T S T G S A S W R A R P L R G F S I * P C P S G M C S G I R S * E V I K S A Q P A A G M A R A A P C P * G S W R R A M R D C T T V L P G I T I * T T * S L V E E Q K F S S
G D Q A V T A V R D G G V R G W S C D Y A L P C Q * V C G L R P L V P P A G G P G P * E A S Q S S L V Q A G C A V G F G P R R * * S Q R S P R R G W Q E L H H V L E E A G E E R * G T V L L C C L G L Q F K L H D L W W R N K S F R P
V-REGION   163..459
  gene TRGV6
  putative_limit 3' side
caggagatcaggctgtcacagcggtccgtgatggtggggtccgcgggtggagctgtgactatgccttgccatgtcagtaggtctgtggattacgtccactggttccgccagctggagggccaggcccctgagaggcttctcaatctagccttgtccaagcgggatgtgcagtgggattcggtcctaggaggtgataaagtcagcgcagcccgcggcggggatggcaagagctgcaccatgtccttgaggaagctggcgaagagcgatgagggactgtactactgtgctgcctgggat Q E I R L S Q R S V M V G S A G G A V T M P C H V S R S V D Y V H W F R Q L E G Q A P E R L L N L A L S K R D V Q W D S V L G G D K V S A A R G G D G K S C T M S L R K L A K S D E G L Y Y C A A W D
R R S G C H S G P * W W G P R V E L * L C L A M S V G L W I T S T G S A S W R A R P L R G F S I * P C P S G M C S G I R S * E V I K S A Q P A A G M A R A A P C P * G S W R R A M R D C T T V L P G
G D Q A V T A V R D G G V R G W S C D Y A L P C Q * V C G L R P L V P P A G G P G P * E A S Q S S L V Q A G C A V G F G P R R * * S Q R S P R R G W Q E L H H V L E E A G E E R * G T V L L C C L G
FR1-IMGT   163..240
  AA_IMGT 1 to 26
caggagatcaggctgtcacagcggtccgtgatggtggggtccgcgggtggagctgtgactatgccttgccatgtcagt Q E I R L S Q R S V M V G S A G G A V T M P C H V S
R R S G C H S G P * W W G P R V E L * L C L A M S
G D Q A V T A V R D G G V R G W S C D Y A L P C Q
1st-CYS   229..231
CDR1-IMGT   241..255
  AA_IMGT AA 27 to 38, AA 30, 31, 32, 33, 34, 35 and 36 are missing
aggtctgtggattac R S V D Y
G L W I
V C G L
FR2-IMGT   256..306
  AA_IMGT 39 to 55
gtccactggttccgccagctggagggccaggcccctgagaggcttctcaat V H W F R Q L E G Q A P E R L L N
S T G S A S W R A R P L R G F S
P L V P P A G G P G P * E A S Q
CONSERVED-TRP   262..264
CDR2-IMGT   307..330
  AA_IMGT AA 56 to 65, AA 60 and 61 are missing
ctagccttgtccaagcgggatgtg L A L S K R D V
* P C P S G M
S L V Q A G C
FR3-IMGT   331..447
  AA_IMGT 66 to 104
cagtgggattcggtcctaggaggtgataaagtcagcgcagcccgcggcggggatggcaagagctgcaccatgtccttgaggaagctggcgaagagcgatgagggactgtactactgt Q W D S V L G G D K V S A A R G G D G K S C T M S L R K L A K S D E G L Y Y C
S G I R S * E V I K S A Q P A A G M A R A A P C P * G S W R R A M R D C T T
V G F G P R R * * S Q R S P R R G W Q E L H H V L E E A G E E R * G T V L L
2nd-CYS   445..447
CDR3-IMGT   448..480
  AA_IMGT AA 105 to 117, AA 111 and 112 are missing
gctgcctgggattacaatttaaactacatgatc A A W D Y N L N Y M I
L P G I T I * T T *
C L G L Q F K L H D
JUNCTION   445..483
tgtgctgcctgggattacaatttaaactacatgatcttt C A A W D Y N L N Y M I F
V L P G I T I * T T * S
C C L G L Q F K L H D L
N-REGION   460..468
tacaattta Y N L
T I
Q F
J-REGION   469..510
  gene TRGJ4
aactacatgatctttggtggaggaacaaaagttttcgtccaa N Y M I F G G G T K V F V Q
T T * S L V E E Q K F S S
L H D L W W R N K S F R P
J-PHE   481..483
C-REGION   511..>708
  IMGT_gene TRGC4
gataaaaaccttcctacagatatcatccccaaacccacaatttttcttccttcaattaatgaggtcaaccatcaacagactgcaacatatctttgtctcctggaaaattttttccctgacgttattaaggtttcttggaaagagaagaatggcaaaagagttctgccatcccagcacggaaataccatgaagaccaat D K N L P T D I I P K P T I F L P S I N E V N H Q Q T A T Y L C L L E N F F P D V I K V S W K E K N G K R V L P S Q H G N T M K T N
I K T F L Q I S S P N P Q F F F L Q L M R S T I N R L Q H I F V S W K I F S L T L L R F L G K R R M A K E F C H P S T E I P * R P
* K P S Y R Y H P Q T H N F S S F N * * G Q P S T D C N I S L S P G K F F P * R Y * G F L E R E E W Q K S S A I P A R K Y H E D Q
EX1   511..>708
gataaaaaccttcctacagatatcatccccaaacccacaatttttcttccttcaattaatgaggtcaaccatcaacagactgcaacatatctttgtctcctggaaaattttttccctgacgttattaaggtttcttggaaagagaagaatggcaaaagagttctgccatcccagcacggaaataccatgaagaccaat D K N L P T D I I P K P T I F L P S I N E V N H Q Q T A T Y L C L L E N F F P D V I K V S W K E K N G K R V L P S Q H G N T M K T N
I K T F L Q I S S P N P Q F F F L Q L M R S T I N R L Q H I F V S W K I F S L T L L R F L G K R R M A K E F C H P S T E I P * R P
* K P S Y R Y H P Q T H N F S S F N * * G Q P S T D C N I S L S P G K F F P * R Y * G F L E R E E W Q K S S A I P A R K Y H E D Q

Literature references

[2] 1-708
Hein W.R.
Submitted to the ENA/GenBank/DDBJ databases (15-JUN-1992)
Wayne R. Hein, Basel Institute for Immunology, Grenzacherstrasse, 487, CH-4058 Basel, Switzerland
[3] 1-708
Hein W.R., Dudler L.
Divergent evolution of the T cell repertoire : extensive diversity and developmentally regulated expression of the sheep gamma/delta T cell receptor
EMBO J. 12:712-724 (1993)

Database cross-references

Database Identifiers Relation
ENA Z13007

Sequence

Length : 708 BP
Composition : 168 A; 188 C; 191 G; 161 T; 0 other

     aagcaccact cagaccctga cctgacctcc atcacacgcc caggtgtgga gcctcagggc        60
     aacttgagcc ccaccaccat gggcttttcc ctcggggcag agggcagagc cgtgctaggc       120
     cgcctggccc tcctctgggc cctcgtggtt ccaggtatcc agcaggagat caggctgtca       180
     cagcggtccg tgatggtggg gtccgcgggt ggagctgtga ctatgccttg ccatgtcagt       240
     aggtctgtgg attacgtcca ctggttccgc cagctggagg gccaggcccc tgagaggctt       300
     ctcaatctag ccttgtccaa gcgggatgtg cagtgggatt cggtcctagg aggtgataaa       360
     gtcagcgcag cccgcggcgg ggatggcaag agctgcacca tgtccttgag gaagctggcg       420
     aagagcgatg agggactgta ctactgtgct gcctgggatt acaatttaaa ctacatgatc       480
     tttggtggag gaacaaaagt tttcgtccaa gataaaaacc ttcctacaga tatcatcccc       540
     aaacccacaa tttttcttcc ttcaattaat gaggtcaacc atcaacagac tgcaacatat       600
     ctttgtctcc tggaaaattt tttccctgac gttattaagg tttcttggaa agagaagaat       660
     ggcaaaagag ttctgccatc ccagcacgga aataccatga agaccaat                    708
Created:
23/07/1995
Database development:
Denys CHAUME, Patrice DUROUX, Nelly JOUFFRE
Database scientific officer:
Marie-Paule Lefranc