FR-IMGT and CDR-IMGT lengths: Emerald rockcod (Trematomus bernacchii) IGHV

Only FUNCTIONAL and ORF V-GENEs are shown.

IGHV
genes		 FR1-IMGT
 1 to 26		 CDR1-IMGT
27 to 38		 FR2-IMGT
39 to 55		 CDR2-IMGT
56 to 65		 FR3-IMGT
66 to 104		 CDR3-IMGT
(germline V-GENE)
105 to 115
(25) (6 to 9) (17) (5 to 10) (37,38) (2) (1)
IGHV1S1
IGHV1S2
IGHV1S3
IGHV1S4
IGHV1S5
IGHV1S6
IGHV1S7
IGHV1S8
IGHV1S9
IGHV1S10
IGHV1S11
IGHV1S12
IGHV1S13
IGHV1S14
IGHV1S15
IGHV1S16
IGHV1S17
IGHV1S18
IGHV1S19
IGHV1S20		 -1 (aa 10)
-1 (aa 10)
 
-1 (aa 10)
-1 (aa 10)
-1 (aa 10)
-1 (aa 10)
-1 (aa 10)
-1 (aa 10)
-1 (aa 10)
-1 (aa 10)
-1 (aa 10)
-1 (aa 10)
-1 (aa 10)
-1 (aa 10)
-1 (aa 10)
 
-1 (aa 10)
 
 
 8
8
8
8
8
8
8
8
8
8
8
8
8
7
8
8
8
8
n.d.
n.d.		   7
8
9
10
9
10
9
9
10
8
9
9
9
9
8
8
7
9
8
n.d.		 -1 (aa 73)
-1 (aa 73)
-1 (aa 73)
-1 (aa 73)
-1 (aa 73)
-1 (aa 73)
-1 (aa 73)
-1 (aa 73)
-1 (aa 73)
-1 (aa 73)
-1 (aa 73)
-1 (aa 73)
-2 (aa 73,81)
-2 (aa 73,81)
 
-1 (aa 73)
-1 (aa 73)
-1 (aa 73)
-1 (aa 73)
-1 (aa 73)
 2 (1)
IGHV2S1
IGHV2S2
IGHV2S3
IGHV2S4		 -1 (aa 10)
-1 (aa 10)
 
 		 8
9
8
n.d.		   6
8
8
8		 -1 (aa 73) 2 (1)
IGHV3S1
IGHV3S2
IGHV3S3
IGHV3S4
IGHV3S5		 -1 (aa 10) 7
7
7
6
6		   7
6
6
7
5		 -1 (aa 73) 2 (1)
n.d.: not defined, partial sequence in 5'

The proteolytic cleavage site between the leader peptide and the V-REGION is putative and the assignment of amino acid 1 to one or the other region is uncertain.

IMGT note:
(1) Probable CDR3-IMGT length but needs to be confirmed with germline sequences.

Created: 08/09/1999
Last updated: Friday, 22-Sep-2023 18:17:38 CEST
Authors: Sylvaine Artero and Nathalie Bosc