FR-IMGT and CDR-IMGT lengths: Atlantic salmon (Salmo salar) IGIV

Only FUNCTIONAL and ORF V-GENEs are shown.

IGIV
genes		 FR1-IMGT
1 to 26		 CDR1-IMGT
27 to 38		 FR2-IMGT
39 to 55		 CDR2-IMGT
56 to 65		 FR3-IMGT
66 to 104		 CDR3-IMGT
(germline V-GENE)
105 to 115
(26) (6,8,11,12) (17) (3,10) (36,37,39) (8,10,11)
IGIV1S1
IGIV1S2
IGIV1S3
IGIV1S4
IGIV1S5
IGIV1S6
IGIV1S7
IGIV1S8
IGIV1S9
IGIV1S10
IGIV1S11
IGIV1S12
IGIV1S13
IGIV1S14
IGIV1S15		   11
11
11
8
8
8
12
12
12
6
6
6
6
6
6		   3 -3 (aa 73,81,82)
-3 (aa 73,81,82)
-3 (aa 73,81,82)
-3 (aa 73,81,82)
-3 (aa 73,81,82)
-3 (aa 73,81,82)
-3 (aa 73,81,82)
-3 (aa 73,81,82)
-3 (aa 73,81,82)
-3 (aa 73,81,82) + 3 (aa 84A,84B,84C)
-3 (aa 73,81,82) + 3 (aa 84A,84B,84C)
-3 (aa 73,81,82)
-3 (aa 73,81,82)
-3 (aa 73,81,82) + 3 (aa 84A,84B,84C)
-3 (aa 73,81,82) + 3 (aa 84A,84B,84C)		 8 (1)
8 (1)
11 (1)
11 (1)
11 (1)
11 (1)
11 (1)
11 (1)
11 (1)
8
8
8
8 (1)
8 (1)
8 (1)
IGIV2S1   -   10 -2 (aa 73,81) 10 (1)

IMGT note:
(1) Probable CDR3-IMGT length but needs to be confirmed with germline sequences.

Created: 06/06/2003
Author: Nathalie Bosc