IMGT Web resources: IMGT repertoire Strand and loop lengths (C-DOMAIN): Rat (Rattus norvegicus, Rattus rattus) IGH

Click on the IMGT gene name to view IMGT Collier de Perles.
IMGT/LIGM-DB accession numbers or PDB codes are available in Protein displays.

Click here to see Norway rat (Rattus norvegicus) IGHC CH2

Click here to see Norway rat (Rattus norvegicus) IGHC CH3

Click here to see Norway rat (Rattus norvegicus) IGHC CH4

Click here to see Part 2 - Black rat (Rattus rattus) IGHC.

Part 1 - Norway rat (Rattus norvegicus) IGHC.

Norway rat (Rattus norvegicus) IGHC CH1

IMGT
gene name		 A
1,9-1,1,
1-15
(18,19)		 AB
15.1-15.3
 
(0,1)		 B
16-26
 
(11)		 BC
27-36
 
(8)		 C
39-45
 
(7)		 CD
45.1-45.7
 
(3,6)		 D
77-84
 
(8)		 DE
 
 
(6,7)		 E
85-96
 
(10,12)		 EF
96.1-96.2
 
(0,2)		 F
97-104
 
(7,8)		 FG
105-117
 
(9,11)		 G
118-128
 
(4,5,7)		 Total
 
 
 
IGHE +4,-1 18   11 8 7 3 8 6 10   7 11 5 94
IGHG1 +4 19   11 8 7 3 8 7 12   7 11 4 97
IGHG2A +4 19   11 8 7 3 8 7 12   7 11 4 97
IGHG2B +4 19   11 8 7 3 8 7 10 (1)   7 11 4 95
IGHM +4 19 1 11 8 7 6 8 7 12 2 8 9 7 105

Norway rat (Rattus norvegicus) IGHC CH2

IMGT
gene name		 A
1,9-1,1,
1-15
(18,20-22)		 AB
15.1-15.3
 
(1-3)		 B
16-26
 
(11)		 BC
27-36
 
(8,10)		 C
39-45
 
(7)		 CD
45.1-45.7
 
(4,5)		 D
77-84
 
(8)		 DE
 
 
(8,12)		 E
85-96
 
(12)		 EF
96.1-96.2
 
(0)		 F
97-104
 
(8)		 FG
105-117
 
(9,11)		 G
118-128
 
(8)		 Total
 
 
 
IGHE +7 22 1 11 8 7 5 8 8 12   8 9 8 107
IGHG1 +3 18 2 11 10 7 4 8 8 12   8 11 8 107
IGHG2A +3 18 2 11 10 7 4 8 8 12   8 11 8 107
IGHG2B +6 21 2 11 10 7 4 8 8 12   8 11 8 110
IGHM +5 20 3 11 8 7 5 8 12 12   8 9 10 113

Norway rat (Rattus norvegicus) IGHC CH3

IMGT
gene name		 A
1,9-1,1,
1-15
(19,20)		 AB
15.1-15.3
 
(0,1)		 B
16-26
 
(11)		 BC
27-36
 
(8,9)		 C
39-45
 
(7)		 CD
45.1-45.7
 
(4,6)		 D
77-84
 
(8)		 DE
 
 
(8,11)		 E
85-96
 
(12)		 EF
96.1-96.2
 
(0)		 F
97-104
 
(8)		 FG
105-117
 
(11,12)		 G
118-128
 
(8)		 Total
 
 
 
IGHA +4 19 1 11 8 7 6 8 11 12   8 12 8 111
IGHE +5 20 1 11 9 7 4 8 8 12   8 11 8 107
IGHG1 +4 19   11 8 7 4 8 8 12   8 12 8 105
IGHG2A +4 19   11 8 7 4 8 8 12   8 12 8 105
IGHG2B +4 19   11 8 7 4 8 8 12   8 12 8 105
IGHM +4 19 1 11 9 7 4 8 8 12   8 11 8 106

Norway rat (Rattus norvegicus) IGHC CH4

IMGT
gene name		 A
1,9-1,1,
1-15
(18,20)		 AB
15.1-15.3
 
(0,1)		 B
16-26
 
(11)		 BC
27-36
 
(8)		 C
39-45
 
(7)		 CD
45.1-45.7
 
(6)		 D
77-84
 
(8)		 DE
 
 
(10)		 E
85-96
 
(12)		 EF
96.1-96.2
 
(0)		 F
97-104
 
(8)		 FG
105-117
 
(12,13)		 G
118-128
 
(8)		 Total
 
 
 
IGHE +4,-1 18   11 8 7 6 8 10 12   8 13 8 109
IGHM +5 20 1 11 8 7 6 8 10 12   8 12 8 111

Part 1 - Black rat (Rattus rattus) IGHC.

Click here to see Black rat (Rattus rattus) IGHC CH2

Click here to see Black rat (Rattus rattus) IGHC CH3

Black rat (Rattus rattus) IGHC CH1

IMGT
gene name		 A
1,9-1,1,
1-15
(19)		 AB
15.1-15.3
 
(0)		 B
16-26
 
(11)		 BC
27-36
 
(8)		 C
39-45
 
(7)		 CD
45.1-45.7
 
(3)		 D
77-84
 
(8)		 DE
 
 
(7)		 E
85-96
 
(12)		 EF
96.1-96.2
 
(0)		 F
97-104
 
(7)		 FG
105-117
 
(11)		 G
118-128
 
(4)		 Total
 
 
 
IGHG2C +4 19   11 8 7 3 8 7 12   7 11 4 97

Black rat (Rattus rattus) IGHC CH2

IMGT
gene name		 A
1,9-1,1,
1-15
(20)		 AB
15.1-15.3
 
(2)		 B
16-26
 
(11)		 BC
27-36
 
(10)		 C
39-45
 
(7)		 CD
45.1-45.7
 
(4)		 D
77-84
 
(8)		 DE
 
 
(8)		 E
85-96
 
(12)		 EF
96.1-96.2
 
(0)		 F
97-104
 
(8)		 FG
105-117
 
(11)		 G
118-128
 
(8)		 Total
 
 
 
IGHG2C +5 20 2 11 10 7 4 8 8 12   8 11 8 109

Black rat (Rattus rattus) IGHC CH3

IMGT
gene name		 A
1,9-1,1,
1-15
(19)		 AB
15.1-15.3
 
(0)		 B
16-26
 
(11)		 BC
27-36
 
(8)		 C
39-45
 
(7)		 CD
45.1-45.7
 
(4)		 D
77-84
 
(8)		 DE
 
 
(8)		 E
85-96
 
(12)		 EF
96.1-96.2
 
(0)		 F
97-104
 
(8)		 FG
105-117
 
(12)		 G
118-128
 
(8)		 Total
 
 
 
IGHG2C +4 19   11 8 7 4 8 8 12   8 12 8 105

IMGT note:
(1) The amino acids 91 and 92 are missing.

Created: 09/10/2002
Author: Delphine Guiraudou