IMGT Repertoire (IG and TR)

Rearrangements and junctions in T cell lines : Human TRB, TRG and TRD

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TR rearrangements in human leukemia/lymphoma T cell lines

T cell lines are from [1]. Rearrangements (from [1], unless indicated) are described in this table according to IMGT gene nomenclature.
Allele names are only reported for V and J genes when long sequences are available. TRBD alleles are from IMGT/JunctionAnalysis.
The codon 118 (J-PHE of the 5’J-REGION) has been added in 3’ of the junction sequences, if missing, based on the assignment of the TRBJ, TRGJ and TRDJ genes in the publications, to allow analysis by IMGT/JunctionAnalysis in IMGT/V-QUEST: ttt or ttc for TRBJ or TRDJ, ttt for TRGJ;

T cell malignancy of origin	Surface receptors	T cell line	Alternative clone cell line	ATCC®	TRB			TRG		TRD
					TRBV - TRBD- TRBJ rearrangements	In frame	Partial (D-J, V-D) or unusual (D-D, J-J) rearrangements	TRGV - TRGJ rearrangements	In frame	TRDV - TRDD- TRDJ rearrangements	In frame	Partial (D-J) or deltaRec rearrangements
T ALL	CD3-	ARR			TRBV14 - TRBD2*02 - TRBJ2-7	+	TRBD1 - TRBJ1-1	TRGV4 - TRGJ1 or TRGJ2	-	TRDV1 - TRDD3*01 - TRDJ1	+
							TRBD1 - TRBJ1-6	TRGV9 - TRGJP1	+
		CML-T1			TRBV5-8 - TRBJ2-7	+		TRGV2 - TRGJ1 or TRGJ2	+
					TRBV10-3 - TRBJ2-7	+		TRGV4 - TRGJ1 or TRGJ2	-
					TRBV19 - TRBD2*01 - TRBJ2-5	+
		DU.528			TRBV28 - TRBD1*01 - TRBJ2-2	+	TRBD1 - TRBD2	TRGV8 - TRGJ1 or TRGJ2	-
								TRGV2 - TRGJ1 or TRGJ2	-
		H-SB2			TRBV5-1 - TRBD1*01 - TRBJ1-1	+		TRGV9 - TRGJ1 or TRGJ2	-
								TRGV10 - TRGJ1 or TRGJ2	-
		Karpas 45			TRBV20-1 - TRBD2*01 - TRBJ2-5	+		TRGV10 - TRGJ1 or TRGJ2	+
					TRBV5-1 - TRBD2*01 - TRBJ2-1	-		TRGV8 - TRGJ1 or TRGJ2	+
		KE-37	SKW-3		TRBV3-2 - TRBD1*01 - TRBJ1-5	-		TRGV8 - TRGJ1 or TRGJ2	-
								TRGV9 - TRGJ1 or TRGJ2	+
		MOLT-3 (1)		CRL-1552™	TRBV10-3 - TRBD1*01 - TRBJ2-5	-		TRGV2 - TRGJP1	-
		MOLT-4 (1)		CRL-1582™	TRBV20-1*01 - TRBD2*01 - TRBJ2-1*01 (M12886)	+		TRGV2 - TRGJP1	-
					TRBV10-3 - TRBD1*01 - TRBJ2-5	-		TRGV2 - TRGJP2 (X12620)	-
		PF-382			TRBV20-1 - TRBD2*01 - TRBJ2-1	+		TRGV4 - TRGJ1 or TRGJ2	-
					TRBV7-5 - TRBD1*01 - TRBJ2-7	-		TRGV10 - TRGJ1 or TRGJ2	+
		P12-Ichikawa			TRBV6-1 - TRBD1*01 - TRBJ2-1	+		TRGV4 - TRGJ1 or TRGJ2	-	TRDV1 - TRDD3*01 - TRDJ1	-	TRBD1 - TRBJ1-5
								TRGV9 - TRGJ1 or TRGJ2	+
		RPMI 8402	ALL-1		TRBV19 - TRBD1*01 - TRBJ2-7	-		TRGV4 - TRGJ1 or TRGJ2	+
					TRBV15 - TRBD1*01 - TRBJ1-5	+		TRGV10 - TRGJ1 or TRGJ2	-
		SUP-T1		CRL-1942™	TRBV9*01 - TRBD2*01 - TRBJ2-1*01 (M16834)	+		TRGV3 - TRGJ1 or TRGJ2	+
								TRGV4 - TRGJ1 or TRGJ2	-
		SUP-T3			TRBV28 - TRBD1*01 - TRBJ2-3	+		TRGV5 - TRGJ1 or TRGJ2	-
								TRGV8 - TRGJ1 or TRGJ2	+
	TR-ALPHA_BETA	CCRF-CEM		CCL-119™	TRBV3-1*01 - TRBD1*01 - TRBJ2-3*01 (M13576)	+	TRBJ1-5 - TRBJ2-1	TRGV3 - TRGJ1 or TRGJ2	+
							TRBV9 - TRBD2 (X02987)	TRGV4 - TRGJ1 or TRGJ2	+
		HPB-ALL			TRBV5-5*02 - TRBD2*01 - TRBJ2-5*01 (M14299, M13551)	+		TRGV3 - TRGJ1 or TRGJ2	-
					TRBV7-3*05 - TRBD2*02 - TRBJ2-5*01 (M13550, M12883)	-		TRGV3 - TRGJ1 or TRGJ2	-
		Jurkat	E6-1 clone	TIB-152™	TRBV12-3*01 - TRBD1*01 - TRBJ1-2*01 (GU326331, X02515, X01417)	+	TRBD1 - TRBJ1-3	TRGV8 - TRGJ1 or TRGJ2	+
								TRGV11 - TRGJ1 or TRGJ2	-
		K-T1			TRBV24-1 - TRBD1*01 - TRBJ1-2	-		TRGV9 - TRGJ1 or TRGJ2	-
					TRBV18 - TRBD1*01 - TRBJ2-3	+		TRGV8 - TRGJ1 or TRGJ2	+
		MOLT 16	MOLT 17		TRBV20-1 - TRBD2*01 - TRBJ2-3	+		TRGV8 - TRGJP2	+
					TRBV27 - TRBD1*01 - TRBJ1-1	-		TRGV8 - TRGJ1 or TRGJ2	+
		TALL-1			TRBV20-1 - TRBD1*01 - TRBJ2-5	+		TRGV5 - TRGJ1 or TRGJ2	+
					TRBV5-6 - TRBD2*01 - TRBJ2-3	-		TRGV11 - TRGJ1 or TRGJ2	-
		TALL-104		CRL-11386™	TRBV20-1 - TRBD2*01 - TRBJ2-3	+		TRGV8 - TRGJ1 or TRGJ2	-
					TRBV24-1 - TRBD1*01 - TRBJ2-2	-		TRGV10 - TRGJ1 or TRGJ2	-
	TR-BETA_DELTA	DND-41			TRBV6-2 - TRBD1*01 - TRBJ2-7	-		TRGV5 - TRGJ1 or TRGJ2	-	TRDV1 - TRDD2*01 - TRDJ1	+
					TRBV18 - TRBD1*01 - TRBJ1-2	+		TRGV8 - TRGJ1 or TRGJ2	-
	TR-GAMMA_DELTA	Loucy [2]		CRL-2629™	TRBV20-1 - TRBD1*01 - TRBJ2-2	-		TRGV2 - TRGJ1 or TRGJ2	+	TRAV23/DV6 - TRDJ2	-	TRDD2 - TRDJ1
					TRBV5-6 - TRBD1*01 - TRBJ2-1	+		TRGV9 - TRGJ1 or TRGJ2	+
		MOLT 13			TRBV10-1 - TRBD1*01 - TRBJ1-1	+	TRBD1 - TRBJ1-5	TRGV3 - TRGJ1 or TRGJ2	+	TRDV1 - TRDD3*01 - TRDJ1	+	dREC - TRDJ1
							TRBD2 - TRBJ2-3	TRGV8 - TRGJP1	-
		Peer	Be13		TRBV4-2 - TRBD2*01 - TRBJ2-3	+		TRGV8 - TRGJ1 or TRGJ2	+	TRDV1 - TRDD3*01 - TRDJ1	+
					TRBV25-1 - TRBD2*01 - TRBJ2-7	-		TRGV9 - TRGJ1 or TRGJ2	-
CTCL		HuT 78	H9	TIB-161™	TRBV13 - TRBD1*01 - TRBJ1-2	+		TRGV5 - TRGJ1 or TRGJ2	+
							TRBD2 - TRBJ2-3	TRGV8 - TRGJP1	-
		HuT 102		TIB-162™	TRBV30*04 - TRBD2*02 - TRBJ1-2*01 (M13554)	+	TRBD2 - TRBJ2-1	TRGV7 - TRGJ1 or TRGJ2	+
								TRGV8 - TRGJP1	+
ATLL		MT-1			TRBV20-1*03 - TRBD2*01 - TRBJ2-3*01 (M11954)	+		TRGV2 - TRGJ1 or TRGJ2	+
					TRBVC*01 - TRBD2*02 - TRBJ2-3*01 (M11957)	+		TRGV10 - TRGJ1 or TRGJ2	-
ALCL		JB6			TRBV12-4 - TRBD2*01 - TRBJ2-3*01	+	TRBD1 - TRBJ2-2	TRGV2 - TRGJ1 or TRGJ2	+
								TRGV10 - TRGJ1 or TRGJ2	-
		Karpas 299			TRBV20-1 - TRBD2*01 - TRBJ2-7	+	TRBD1 - TRBJ1-6	TRGV2 - TRGJP2	-
								TRGV8 - TRGJ1 or TRGJ2	-
		SU-DHL-1		CRL-2955™	TRBV27 - TRBD1*01 - TRBJ2-3	+		TRGV4 - TRGJ1 or TRGJ2	-
								TRGV2 - TRGJ1 or TRGJ2	-

TRB V-(D)-J junction sequences

T cell line	Alternative clone cell line	TRBV - TRBD- TRBJ rearrangements	3'V-REGION	P	N1	P	D-REGION	P	N2	P	5'J-REGION	-3'V (N) -5'D (D) -3'D (N) -5'J
ARR		TRBV14 - TRBD2*02 - TRBJ2-7	tgtgccagcagcc....		tt		....ctagcgggag..		tcc		..cctacgagcagtacttc	-4 (2) -4 (10) -2 (3) -2
CML-T1		TRBV5-8 - TRBJ2-7	tgtgccagcagct...								..cctacgagcagtacttc	-3 (0) 0 (0) 0 (0) -2
		TRBV10-3 - TRBJ2-7	tgtgccatcagt.....								....tacgagcagtacttc	-5 (0) 0 (0) 0 (0) -4
		TRBV19 - TRBD2*01 - TRBJ2-5	tgtgcc...........		tccactaccc		.ggactagcgggggg.				..caagagacccagtacttc	-11 (10) -1 (14) -1 (0) -2
DU.528		TRBV28 - TRBD1*01 - TRBJ2-2	tgtgccagcagtt....		cac		..gacagggggc	gc	tttttaa		.gaacaccggggagctgtttttt	-4 (3) -2 (10) 0 (9) -1
H-SB2		TRBV5-1 - TRBD1*01 - TRBJ1-1	tgcgccagcagct...				.ggacaggg...		tatgg		.gaacactgaagctttcttt	-3 (0) -1 (8) -3 (5) -1
Karpas 45		TRBV20-1 - TRBD2*01 - TRBJ2-5	tgcagtgctag...		tggtt		....ctagcgg.....		agccagca		...aagagacccagtacttc	-3 (5) -4 (7) -5 (8) -3
		TRBV5-1 - TRBD2*01 - TRBJ2-1	tgcgccag........		tatctcagcaggta		...actag........		gac		......caatgagcagttcttc	-8 (14) -3 (5) -8 (3) -6
KE-37	SKW-3	TRBV3-2 - TRBD1*01 - TRBJ1-5	tgtgccagcagccaaga		ct	cc	gggacagggg..		cggg		tagcaatcagccccagcatttt	0 (4) 0 (10) -2 (4) 0
MOLT-3		TRBV10-3 - TRBD1*01 - TRBJ2-5	tgtgccatcagtgag..		cc		..gacaggg...		atcag		...aagagacccagtacttc	-2 (2) -2 (7) -3 (5) -3
MOLT-4		TRBV20-1*01 - TRBD2*01 - TRBJ2-1*01 (2)	tgcagtgctagaga		gtc		..gactagcg......		atccaaaa		.......aatgagcagttcttc	0 (3) -2 (8) -6 (8) -7
		TRBV10-3 - TRBD1*01 - TRBJ2-5	tgtgccatcagtgag..		cc		..gacaggg...		atcag		...aagagacccagtacttc	-2 (2) -2 (7) -3 (5) -3
PF-382		TRBV20-1 - TRBD2*01 - TRBJ2-1	tgcagtgc......		cacgt	c	gggactagcggg....		ctta		.......aatgagcagttcttc	-6 (6) 0 (12) -4 (4) -7
		TRBV7-5 - TRBD1*01 - TRBJ2-7	tgtgccagaagct...		cagaggcttt		....caggg...		cgag		......cgagcagtacttc	-3 (10) -4 (5) -3 (4) -6
P12-Ichikawa		TRBV6-1 - TRBD1*01 - TRBJ2-1	tgtgccagcagt.....		atcc		.ggac.......		gcctcaccctca		...ctacaatgagcagttcttc	-5 (4) -1 (4) -7 (12) -3
RPMI 8402	ALL-1	TRBV19 - TRBD1*01 - TRBJ2-7	tgtgcc...........		tat		....cagggg..		agagtgggct		ctcctacgagcagtacttc	-11 (3) -4 (6) -2 (10) 0
		TRBV15 - TRBD1*01 - TRBJ1-5	tgtgccaccagcagaga	t	ggaa		.....aggg...		c		.agcaatcagccccagcatttt	0 (5) -5 (4) -3 (1) -1
SUP-T1		TRBV9*01 - TRBD2*01 - TRBJ2-1*01	tgtgccagcagcgtag		gtgg		.....tagc.......		ttgaaa		.............cagttcttc	0 (4) -5 (4) -7 (6) -13
SUP-T3		TRBV28 - TRBD1*01 - TRBJ2-3	tgtgccagcagttta..				.ggacagg....		ccctc		agcacagatacgcagtatttt	-2 (0) -1 (7) -4 (5) 0
CCRF-CEM		TRBV3-1*01 - TRBD1*01 - TRBJ2-3*01	tgtgccagcagcc....		tt		ggg.........				...acagatacgcagtatttt	-4 (2) 0 (3) -9 (0) -3
HPB-ALL		TRBV5-5*02 - TRBD2*01 - TRBJ2-5*01	tgtgccagcagct...		c		.......gcgg.....		aaa		........acccagtacttc	-3 (1) -7 (4) -5 (3) -8
		TRBV7-3*05 - TRBD2*02 - TRBJ2-5*01	tgtgccagcagc.....		ccaa		.........gggagg.				.....gagacccagtacttc	-5 (4) -9 (6) -1 (0) -5
Jurkat	E6-1 clone	TRBV12-3*01 - TRBD1*01 - TRBJ1-2*01	tgtgccagcagttt...		ctc		..gac.......		ctgttcg	g	ctaactatggctacaccttc	-3 (3) -2 (3) -7 (8) 0
K-T1		TRBV24-1 - TRBD1*01 - TRBJ1-2	tgtgccac..........		gccccccc		..gacag.....		tttg		.taactatggctacaccttc	-10 (8) -2 (5) -5 (4) -1
		TRBV18 - TRBD1*01 - TRBJ2-3	tgtgccagctcacc...		ga		..gacagg....		cgacgg		....cagatacgcagtatttt	-3 (2) -2 (6) -4 (6) -4
MOLT 16	MOLT 17	TRBV20-1 - TRBD2*01 - TRBJ2-3	tgcagtgc......		aggggagt		........cgggggg.		cgta		...acagatacgcagtatttt	-6 (8) -8 (7) -1 (4) -3
		TRBV27 - TRBD1*01 - TRBJ1-1	tgtgccagca.......		ccgaccc		.ggacagggg..		aatgg		.....actgaagctttcttt	-7 (7) -1 (9) -2 (5) -5
TALL-1		TRBV20-1 - TRBD1*01 - TRBJ2-5	tgcagtg.......		accc		....cag.....		cag		....agagacccagtacttc	-7 (4) -4 (3) -5 (3) -4
		TRBV5-6 - TRBD2*01 - TRBJ2-3	tgtgccagcagc....		g		gggactagcggg....		tgagg		......gatacgcagtatttt	-4 (1) 0 (12) -4 (5) -6
TALL-104		TRBV20-1 - TRBD2*01 - TRBJ2-3	tgcagtgcta....		agctta		.........ggggggg		gcgcc		....cagatacgcagtatttt	-4 (6) -9 (7) 0 (5) -4
		TRBV24-1 - TRBD1*01 - TRBJ2-2	tgtgccaccagtgat...		ct		gggacaggg...		a		.....accggggagctgtttttt	-3 (2) 0 (9) -3 (1) -5
DND-41		TRBV6-2 - TRBD1*01 - TRBJ2-7	tgtgccagcagttac..		cccc		..gacaggg...		aggagaggg	g	ctcctacgagcagtacttc	-2 (4) -2 (7) -3 (10) 0
		TRBV18 - TRBD1*01 - TRBJ1-2	tgtgccagctcacc...			c	gggacaggg...		aga		.....tatggctacaccttc	-3 (1) 0 (9) -3 (3) -5
Loucy		TRBV20-1 - TRBD1*01 - TRBJ2-2	tgcagtgctagag.		cagaggcg		....cagg....				.gaacaccggggagctgtttttt	-1 (8) -4 (4) -4 (0) -1
		TRBV5-6 - TRBD1*01 - TRBJ2-1	tgtgccagcagc....		cg		.....agggg..		aacccccctgga		..cctacaatgagcagttcttc	-4 (2) -5 (5) -2 (12) -2
MOLT 13		TRBV10-1 - TRBD1*01 - TRBJ1-1	tgcgccagcag......		gagagttaga	c	gggacag.....				.gaacactgaagctttcttt	-6 (11) 0 (7) -5 (0) -1
Peer	Be13	TRBV4-2 - TRBD2*01 - TRBJ2-3	tgtgccagcagccaaga				..gact..........		ctaccactccgcctggg		........tacgcagtatttt	0 (0) -2 (4) -10 (17) -8
		TRBV25-1 - TRBD2*01 - TRBJ2-7	tgtgccagca.......		cggt		..........ggag..		cagtaccc		..cctacgagcagtacttc	-7 (4) -10 (4) -2 (8) -2
HuT 78	H9	TRBV13 - TRBD1*01 - TRBJ1-2	tgtgccagcagc.....		accagcc		....cagggggc		cgg		........ggctacaccttc	-5 (7) -4 (8) 0 (3) -8
HuT 102		TRBV30*04 - TRBD2*02 - TRBJ1-2*01	tgtgcctggagt..		aggca		..........ggagg.		cggttggc		........ggctacaccttc	-2 (5) -10 (5) -1 (8) -8
MT-1		TRBV20-1*03 - TRBD2*01 - TRBJ2-3*01	tgcagtgcta....		a		...actag........		taggt		...acagatacgcagtatttt	-4 (1) -3 (5) -8 (5) -3
		TRBVC*01 - TRBD2*02 - TRBJ2-3*01	tgcaccagcagt.....		ccat		.ggactagcggga...		tt		...acagatacgcagtatttt	-5 (4) -1 (12) -3 (2) -3
JB6		TRBV12-4 - TRBD2*01 - TRBJ2-3*01	tgtgccagcag......				...actagcgggggg.		ac		....cagatacgcagtatttt	-6 (0) -3 (12) -1 (2) -4
Karpas 299		TRBV20-1 - TRBD2*01 - TRBJ2-7	tgcagtgctagag.		cccagatagggt		....ctagc.......		cccct		......cgagcagtacttc	-1 (12) -4 (5) -7 (5) -6
SU-DHL-1		TRBV27 - TRBD1*01 - TRBJ2-3	tgtgccagcagttt...		cagt		.....agggg..		a		...acagatacgcagtatttt	-3 (4) -5 (5) -2 (1) -3

TRG V-(D)-J junction sequences

T cell line	Alternative clone cell line	TRGV - TRGJ rearrangements	3'V-REGION	P	N	P	5'J-REGION	-3'V (N) -5'J
ARR		TRGV9 - TRGJP1	tgtgccacctggga....				.............................gaacaacactt	-4 (0) -29
		TRGV4 - TRGJ1 or TRGJ2	tgtgccttgtggga....		ctttaaattgggttca		.....actggttggttcaagatattt	-4 (16) -5
CML-T1		TRGV2 - TRGJ1 or TRGJ2	tgtgccacctggga....		gggcccca		.......................gcagtggaacaacactg	-4 (8) -23
		TRGV4 - TRGJ1 or TRGJ2	tgtgccacctgggatggg		accaggag		..attattataagaaactcttt	0 (8) -2
DU.528		TRGV8 - TRGJ1 or TRGJ2	tgtgcca...........		aa		.....attataagaaactcttt	-11 (2) -5
		TRGV2 - TRGJ1 or TRGJ2	tgtgccacctgggacgg.		cccctc	tc	gaattattataagaaactcttt	-1 (8) 0
H-SB2		TRGV9 - TRGJ1 or TRGJ2	tgtgccttgtgggaggtg				..attattataagaaactcttt	0 (0) -2
		TRGV10 - TRGJ1 or TRGJ2	tgtgctgcgtgg........		gattatcag		...ttattataagaaactcttt	-8 (9) -3
Karpas 45		TRGV10 - TRGJ1 or TRGJ2	tgtgctgcgtgg........		gta		.aattattataagaaactcttt	-8 (3) -1
		TRGV8 - TRGJ1 or TRGJ2	tgtgccacctgg......		tc		.........taagaaactcttt	-6 (4) -11
KE-37	SKW-3	TRGV8 - TRGJ1 or TRGJ2	tgtgccacctggga....		ccgtccgccatcccgt		..attattataagaaactcttt	-4 (16) -2
		TRGV9 - TRGJ1 or TRGJ2	tgtgccttgtgggaggtg	c		c	gaattattataagaaactcttt	0 (2) 0
MOLT-3		TRGV2 - TRGJP1	tgtgccacct........		tcg		...................gatattt	-8 (3) -19
MOLT-4		TRGV2 - TRGJP1	tgtgccacct........		tcg		...................gatattt	-8 (3) -19
		TRGV2 - TRGJP2	tgtgccacctggga....		ggggggtgtct		.......tgattggatcaagacgttt	-4 (11) -7
PF-382		TRGV4 - TRGJ1 or TRGJ2	tgtgccacctggga....				.............................gaacaacactt	-4 (0) -29
		TRGV10 - TRGJ1 or TRGJ2	tgtgctgcgtgg........		gatgagggc		.......tataagaaactcttt	-8 (9) -7
P12-Ichikawa		TRGV4 - TRGJ1 or TRGJ2	tgtgccacctggg.....		ttaaaattcccct		.aattattataagaaactcttt	-5 (13) -1
		TRGV9 - TRGJ1 or TRGJ2	tgtgccttgtgggaggt.		ctccgctt		...........agaaactcttt	-1 (8) -11
RPMI 8402	ALL-1	TRGV4 - TRGJ1 or TRGJ2	tgtgccacctgggatgg.		agcgtcta	c	gaattattataagaaactcttt	-1 (9) 0
		TRGV10 - TRGJ1 or TRGJ2	tgtgctgcgtgg........		ggt		..attattataagaaactcttt	-8 (3) -2
SUP-T1		TRGV3 - TRGJ1 or TRGJ2	tgtgccacctgg......		cgga	c	gaattattataagaaactcttt	-6 (5) 0
		TRGV4 - TRGJ1 or TRGJ2	tgtgccacctgggatggg	c	aata		.aattattataagaaactcttt	0 (5) -1
SUP-T3		TRGV5 - TRGJ1 or TRGJ2	tgtgccacctgggacagg	cc	ggtgcagg		............gaaactcttt	0 (10) -12
		TRGV8 - TRGJ1 or TRGJ2	tgtgccacctggg.....		tc		..........aagaaactcttt	-5 (2) -10
CCRF-CEM		TRGV3 - TRGJ1 or TRGJ2	tgtgccacctgggacag.		ttccc		........ataagaaactcttt	-1 (5) -8
		TRGV4 - TRGJ1 or TRGJ2	tgtgccacctgggat...		taaggggggttg		......................ggcagtggaacaacactt	-3 (12) -22
HPB-ALL		TRGV3 - TRGJ1 or TRGJ2	tgtgccacctgggacagg	c	aaa		.aattattataagaaactcttt	0 (4) -1
		TRGV3 - TRGJ1 or TRGJ2	tgtgccacctggga....		taaacgctgcctttctgacgggggt		......ttataagaaactcttt	-4 (25) -6
Jurkat	E6-1 clone	TRGV8 - TRGJ1 or TRGJ2	tgtgccacctgg......		aaatt		...ttattataagaaactcttt	-6 (5) -3
		TRGV11 - TRGJ1 or TRGJ2	tgtgcctg.............		tcagatcctcacagggcgggtt		.........taagaaactcttt	-13 (22) -9
K-T1		TRGV9 - TRGJ1 or TRGJ2	tgtgcctt..........		ccggcccg		..........aagaaactcttt	-10 (8) -10
		TRGV8 - TRGJ1 or TRGJ2	tgtgccacctgg......		tc		.........taagaaactcttt	-6 (2) -9
MOLT 16	MOLT 17	TRGV8 - TRGJP2	tgtgcc............		cccctggagg		...........tggatcaagacgttt	-12 (10) -11
		TRGV8 - TRGJ1 or TRGJ2	tgtgccacctgg......		acagataggatc		....tattataagaaactcttt	-6 (12) -4
TALL-1		TRGV5 - TRGJ1 or TRGJ2	tgtgccacctgg......			tc	gaattattataagaaactcttt	-6 (2) 0
		TRGV11 - TRGJ1 or TRGJ2	tgtgcctgctggattaggcac		cc		.aattattataagaaactcttt	0 (2) -1
TALL-104		TRGV8 - TRGJ1 or TRGJ2	tgtgccacctgggat...		ctgg		...ttattataagaaactcttt	-3 (4) -3
		TRGV10 - TRGJ1 or TRGJ2	tgtgctgcgtgg........		gaccgcac		.......tataagaaactcttt	-8 (8) -7
DND-41		TRGV5 - TRGJ1 or TRGJ2	tgtgccacc.........		ggccacctt		...ttattataagaaactcttt	-9 (9) -3
		TRGV8 - TRGJ1 or TRGJ2	tgtgccacctggga....		cacataaggggg		...............................acaacactt	-4 (12) -31
Loucy		TRGV2 - TRGJ1 or TRGJ2	tgtgccacctggg.....		gttcccaggatttcac		..................cttt	-5 (16) -18
		TRGV9 - TRGJ1 or TRGJ2	tgtgccttgtgggag...		ccccccccc	tc	gaattattataagaaactcttt	-3 (11) 0
MOLT 13		TRGV3 - TRGJ1 or TRGJ2	tgtgccacctgggacagg	cc	ccgcct		.........taagaaactcttt	0 (8) -9
		TRGV8 - TRGJP1	tgtgccacctgggat...				...ccactggttggttcaagatattt	-3 (0) -3
Peer	Be13	TRGV8 - TRGJ1 or TRGJ2	tgtgccacctgg......		aagg		..attattataagaaactcttt	-6 (4) -2
		TRGV9 - TRGJ1 or TRGJ2	tgtgcctt..........		ccggcccg		..........aagaaactcttt	-10 (8) -10
HuT 78	H9	TRGV5 - TRGJ1 or TRGJ2	tgtgccacctgggacagg	c	ttacct		..attattataagaaactcttt	0 (7) -2
		TRGV8 - TRGJP1	tgtgccacctgg......		acacctt		....cactggttggttcaagatattt	-6 (7) -4
HuT 102		TRGV7 - TRGJ1 or TRGJ2	tgtgccacctgggac...		gcggctg		........ataagaaactcttt	-3 (7) -8
		TRGV8 - TRGJP1	tgtgccacctgggat...		gagc		...ccactggttggttcaagatattt	-3 (4) -3
MT-1		TRGV2 - TRGJ1 or TRGJ2	tgtgccacctgggacggg	cc			......ttataagaaactcttt	0 (2) -6
		TRGV10 - TRGJ1 or TRGJ2	tgtgctgcgtgg........		gat		...ttattataagaaactcttt	-8 (3) -3
JB6		TRGV2 - TRGJ1 or TRGJ2	tgtgccacctggg.....		gatccatataggt		gaattattataagaaactcttt	-5 (13) 0
		TRGV10 - TRGJ1 or TRGJ2	tgtgctgcgtggt.......		cttgaggctggc		............gaaactcttt	-7 (12) -12
Karpas 299		TRGV2 - TRGJP2	tgtgccacctgggacggg		ggttaagttcctt		....tagtgattggatcaagacgttt	0 (13) -4
		TRGV8 - TRGJ1 or TRGJ2	tgtgccacctgggatagg	cc			.....attataagaaactcttt	0 (2) -5
SU-DHL-1		TRGV4 - TRGJ1 or TRGJ2	tgtgccacct........		ctcccaaaacccccaag		..attattataagaaactcttt	-8 (17) -2
		TRGV2 - TRGJ1 or TRGJ2	tgtgccacctggg.....		c		..........aagaaactcttt	-5 (1) -10

TRD V-(D)-J junction sequences

T cell line	Alternative clone cell line	TRDV - TRDD- TRDJ rearrangements	3'V-REGION	P	N1	P	D-REGION	N2	P	5'J-REGION	-3'V (N) -5'D (D) -3'D (N) -5'J
ARR		TRDV1 - TRDD3*01 - TRDJ1	tgtgctctt........		cgggaacg		...gggggat...	ttctacctgtttgggtcgggggaagcgtacacggac		........aaactcatcttt	-8 (8) -3 (7) -3 (36) -8
P12-Ichikawa		TRDV1 - TRDD3*01 - TRDJ1	tgtgctcttggggaact	a	cgacctc	t	actgg........	tcgaag		.caccgataaactcatcttt	0 (9) 0 (5) -8 (6) -1
DND-41		TRDV1 - TRDD2*01 - TRDJ1	tgtgctcttggggaa..			g	ccttcc...	gaccatcacgcacctt		.caccgataaactcatcttt	-2 (1) 0 (6) -3 (16) -1
Loucy		TRAV23/DV6 - TRDJ2	tgtgcagcaagca		aagctgccgg					.tttgacagcacaactcttcttt	-1 (12) 0 (0) 0 (0) -1
MOLT 13		TRDV1 - TRDD3*01 - TRDJ1	tgtgctcttggggaac.				.ctggggg.....		gt	acaccgataaactcatcttt	-1 (0) -1 (7) -5 (2) 0
Peer	Be13	TRDV1 - TRDD3*01 - TRDJ1	tgtgctcttggg.....		ac		...ggggg.....	tgaggggactccagg		acaccgataaactcatcttt	-5 (2) -3 (5) -5 (15) 0

Created: 06/11/2013
Last updated: Wednesday, 12-Jun-2024 16:02:39 CEST
Authors: Emilie Carillon and Marie-Paule Lefranc
Editor: Chantal Ginestoux

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