Alignment of alleles: Goat (Capra hircus) TRAV13S1

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

N (Asn, asparagine) of potential N-glycosylation sites (NXS/T, where X is different from P), (N-linked glycosylation) is shown is green (site is underlined in CHS and in pages edited before 14/10/2009).

                                  1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                                 K   Q   D   V   S   Q   S   P   E   A   L   S   V   R   E   G   D   S   L   V
  AF318513,TRAV13S1*01          AAA CAG GAC GTG AGT CAG AGT CCT GAA GCT CTG AGC GTG AGA GAG GGA GAC AGC TTG GTT

                                                        ___________________CDR1-IMGT____________________
                                 21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40
                                 L   N   S   S   Y   T   D   G   A   L   Y   F                           L   Q
  AF318513,TRAV13S1*01          CTC AAC AGC AGT TAC ACT GAC GGC GCT CTG TAC TTC ... ... ... ... ... ... CTT CAG

                                                                                            _______________CDR2-
                                 41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60 
                                 W   L   R   Q   D   P   R   K   G   L   T   S   L   L   S   I   Q   A   N   Q
  AF318513,TRAV13S1*01          TGG CTC AGG CAG GAT CCC AGG AAA GGG CTC ACA TCT CTA TTG TCA ATT CAG GCG AAC CAG

                                IMGT________________
                                 61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80
                                 K                   E   K   A   S   G                               R   I   T
  AF318513,TRAV13S1*01          AAA ... ... ... ... GAG AAA GCA AGT GGA ... ... ... ... ... ... ... AGA ATT ACA

                                 81  82  83  84 84A 84B 84C  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100
                                 V   S   L   D   K   S   S   R   H   S   A   L   Y   I   A   T   S   Q   H   S   D   S   T
  AF318513,TRAV13S1*01          GTC TCA TTG GAT AAA TCA TCA AGA CAC AGT GCT TTA TAC ATT GCA ACT TCT CAG CAC AGT GAC TCG ACC

                                                _CDR3-IMGT_
                                101 102 103 104 105 
                                 T   Y   L   C   A
  AF318513,TRAV13S1*01          ACC TAC CTC TGT GCT #c
#c : rearranged cDNA

This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 26/09/2002
Author: Géraldine Folch