Alignment of alleles: Goat (Capra hircus) TRAV17S3

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

N (Asn, asparagine) of potential N-glycosylation sites (NXS/T, where X is different from P), (N-linked glycosylation) is shown is green (site is underlined in CHS and in pages edited before 14/10/2009).

                                  1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                                 G   L   D   V   E   Q   S   P   P   A   L   S   L   Q   E   G   A   S   H   M
  AF318516,TRAV17S3*01          GGG CTG GAT GTG GAG CAG AGT CCC CCA GCC CTG AGT CTC CAG GAG GGA GCC AGC CAC ATG

                                                        ___________________CDR1-IMGT____________________
                                 21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40
                                 L   R   C   N   F   S   G   S   V   S   S                               V   Q
  AF318516,TRAV17S3*01          CTG AGG TGC AAT TTT TCT GGC TCC GTG AGC AGT ... ... ... ... ... ... ... GTA CAG

                                                                                            _______________CDR2-
                                 41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60 
                                 W   Y   L   Q   N   P   S   G   R   L   I   H   L   F   N   V   P   S   G
  AF318516,TRAV17S3*01          TGG TAT CTT CAG AAC CCC AGC GGC CGC CTT ATC CAC CTG TTT AAC GTT CCT TCA GGA ...

                                IMGT________________
                                 61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80
                                                     T   K   Q   D   G                               R   L   K
  AF318516,TRAV17S3*01          ... ... ... ... ... ACA AAG CAG GAT GGA ... ... ... ... ... ... ... AGA TTA AAG

                                 81  82  83  84 84A 84B 84C  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100
                                 A   T   T   I   P   T   E   R   S   S   S   L   H   V   S   S   S   Q   T   T   D   S   G
  AF318516,TRAV17S3*01          GCC ACG ACA ATC CCT ACA GAG CGC AGC AGC TCA CTG CAC GTT TCC TCT TCG CAG ACG ACA GAC TCA GGC

                                                _CDR3-IMGT_
                                101 102 103 104 105 106 107 
                                 T   Y   F   C   A   A   R
  AF318516,TRAV17S3*01          ACT TAC TTC TGT GCT GCG CGA #c
#c : rearranged cDNA

This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 26/09/2002
Author: Géraldine Folch