Alignment of alleles: Goat (Capra hircus) TRAV19S1

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

N (Asn, asparagine) of potential N-glycosylation sites (NXS/T, where X is different from P), (N-linked glycosylation) is shown is green (site is underlined in CHS and in pages edited before 14/10/2009).

                                  1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                                 G   Q   S   V   T   Q   P   D   D   P   V   L   V   S   E   G   T   S   L   E
  AF318511,TRAV19S1*01          GGC CAG TCA GTG ACC CAG CCT GAT GAC CCT GTT TTG GTC TCT GAA GGA ACC TCA TTG GAG

                                                        ___________________CDR1-IMGT____________________
                                 21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40
                                 L   K   C   N   Y   S   Y   G   A   T   P   Y                           L   F
  AF318511,TRAV19S1*01          CTG AAG TGT AAC TAT TCC TAC GGT GCA ACT CCC TAT ... ... ... ... ... ... CTA TTC

                                                                                            _______________CDR2-
                                 41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60 
                                 W   Y   V   Q   Y   P   G   Q   R   P   Q   L   L   L   K   Y   F   S   G   N
  AF318511,TRAV19S1*01          TGG TAC GTC CAG TAC CCC GGG CAA AGA CCC CAG CTG CTC CTC AAG TAC TTT TCA GGG AAC

                                IMGT________________
                                 61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80
                                 T   V               V   Q   G   T   R                               G   F   L
  AF318511,TRAV19S1*01          ACC GTG ... ... ... GTT CAA GGC ACT AGA ... ... ... ... ... ... ... GGC TTC CTG

                                 81  82  83  84 84A 84B 84C  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100
                                 A   E   F   K   S   S   D   F   S   F   N   L   R   K   F   S   A   H   W   S   D   S   A
  AF318511,TRAV19S1*01          GCT GAA TTT AAG AGC AGT GAT TTT TCC TTC AAC CTG AGG AAA TTC TCA GCC CAT TGG AGT GAC TCA GCT

                                                _CDR3-IMGT_
                                101 102 103 104 105 106 107 
                                 E   Y   F   C   A   V   T
  AF318511,TRAV19S1*01          GAG TAC TTC TGT GCC GTA ACT #c
#c : rearranged cDNA

This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 26/09/2002
Author: Géraldine Folch