Alignment of alleles: Goat (Capra hircus) TRAV3S1

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

N (Asn, asparagine) of potential N-glycosylation sites (NXS/T, where X is different from P), (N-linked glycosylation) is shown is green (site is underlined in CHS and in pages edited before 14/10/2009).

                                  1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                                 L   A   K   T   S   Q       P   I   I   I   D   S   Y   E   G   Q   E   V   N
  AF318526,TRAV3S1*01           CTT GCT AAG ACC TCC CAG ... CCC ATC ATC ATT GAC TCA TAC GAA GGA CAA GAA GTG AAC

                                                        ___________________CDR1-IMGT____________________
                                 21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40
                                 I   P   C   N   H   T   T   I   A   I   S   E   Y                       I   F
  AF318526,TRAV3S1*01           ATA CCC TGT AAC CAC ACC ACA ATA GCT ATA AGT GAA TAT ... ... ... ... ... ATC TTC

                                                                                            _______________CDR2-
                                 41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60 
                                 W   Y   R   Q   F   P   N   Q   G   P   Q   F   I   I   Q   G   Y   T   T
  AF318526,TRAV3S1*01           TGG TAT CGA CAG TTC CCC AAC CAG GGA CCA CAA TTT ATC ATT CAA GGA TAT ACG ACA ...

                                IMGT________________
                                 61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80
                                                     T   V   E   N   E                               V   A   S
  AF318526,TRAV3S1*01           ... ... ... ... ... ACC GTG GAA AAT GAA ... ... ... ... ... ... ... GTG GCA TCT

                                 81  82  83  84 84A 84B 84C  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100
                                 L   L   I   P   P   D   R   K   L   S   T   L   S   L   P   R   A   S   L   G   D   A   A
  AF318526,TRAV3S1*01           CTG TTA ATT CCT CCT GAC AGG AAG CTC AGC ACC CTG AGC CTG CCC CGG GCT TCC CTG GGA GAC GCC GCT


                                101 102 103 104
                                 V   Y   Y   C
  AF318526,TRAV3S1*01           GTG TAC TAC TGC #c
#c : rearranged cDNA

This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 26/09/2002
Author: Géraldine Folch