Alignment of alleles: Goat (Capra hircus) TRAV4S1

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

N (Asn, asparagine) of potential N-glycosylation sites (NXS/T, where X is different from P), (N-linked glycosylation) is shown is green (site is underlined in CHS and in pages edited before 14/10/2009).

                                  1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                                 K   E   Q   V   F   Q       P   S   T   V   V   S   L   E   G   A   V   A   E
  AF318518,TRAV4S1*01           AAG GAG CAA GTA TTT CAG ... CCT TCC ACT GTG GTC TCT TTG GAG GGA GCT GTG GCA GAA

                                                        ___________________CDR1-IMGT____________________
                                 21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40
                                 V   S   C   N   H   S   I   S   S   D   Y   G                           F   F
  AF318518,TRAV4S1*01           GTT TCC TGT AAT CAC TCT ATA TCC AGT GAT TAT GGC ... ... ... ... ... ... TTC TTC

                                                                                            _______________CDR2-
                                 41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60 
                                 W   Y   L   H   F   P   G   F   A   P   R   L   L   I   E   G   L   R
  AF318518,TRAV4S1*01           TGG TAC CTT CAC TTC CCA GGA TTT GCA CCA AGA CTC CTC ATT GAG GGT TTA AGG ... ...

                                IMGT________________
                                 61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80
                                                     P   S   Q   Q   G                               R   Y   N
  AF318518,TRAV4S1*01           ... ... ... ... ... CCT TCT CAA CAG GGA ... ... ... ... ... ... ... CGC TAC AAC

                                 81  82  83  84 84A 84B 84C  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100
                                 M   T   Y   E   R           F   S   S   S   L   L   I   L   Q   V   Q   T   A   D   A   G
  AF318518,TRAV4S1*01           ATG ACA TAT GAG AGG ... ... TTC TCT TCA TCA CTG CTC ATC CTC CAG GTG CAG ACG GCA GAT GCA GGG

                                                ___CDR3-IMGT___
                                101 102 103 104 105 106 107 108
                                 V   Y   Y   C   A   V   D   P
  AF318518,TRAV4S1*01           GTT TAC TAT TGT GCT GTG GAC CCC #c
#c : rearranged cDNA

This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 26/09/2002
Author: Géraldine Folch