Alignment of alleles: Goat (Capra hircus) TRAV6S1

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

N (Asn, asparagine) of potential N-glycosylation sites (NXS/T, where X is different from P), (N-linked glycosylation) is shown is green (site is underlined in CHS and in pages edited before 14/10/2009).

                                  1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                                 A   Q   K   V   A   Q   N   R   S   E   I   S   V   L   E   K   E   D   V   T
  AF318527,TRAV6S1*01           GCC CAG AAA GTA GCT CAA AAT CGG TCA GAA ATT TCT GTG CTG GAG AAG GAG GAT GTA ACC

                                                        ___________________CDR1-IMGT____________________
                                 21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40
                                 L   N   C   A   Y   E   A   N   S   Y   T   Y   Y                       L   F
  AF318527,TRAV6S1*01           TTG AAC TGT GCA TAT GAA GCT AAT AGC TAT ACT TAT TAT ... ... ... ... ... TTA TTC

                                                                                            _______________CDR2-
                                 41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60 
                                 W   Y   K   Q   P   P   S   G   E   M   I   F   L   I   H   Q   E   S   Y   N
  AF318527,TRAV6S1*01           TGG TAC AAG CAA CCA CCA AGT GGG GAA ATG ATT TTC CTT ATT CAT CAG GAG TCT TAC AAT

                                IMGT________________
                                 61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80
                                 E   L               N   T   T   K   G                               Q   Y   F
  AF318527,TRAV6S1*01           GAG CTG ... ... ... AAT ACA ACA AAA GGT ... ... ... ... ... ... ... CAG TAT TTT

                                 81  82  83  84 84A 84B 84C  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100
                                 L   N   F   Q   K   A   T   S   S   I   S   L   T   I   T   D   L   Q   L   E   D   S   A
  AF318527,TRAV6S1*01           TTG AAC TTC CAG AAA GCA ACG AGT TCC ATC AGC CTC ACC ATC ACA GAC TTA CAG CTC GAG GAC TCA GCG

                                                _____CDR3-IMGT_____
                                101 102 103 104 105 106 107 108 109 
                                 V   Y   F   C   A   L   R   D   R
  AF318527,TRAV6S1*01           GTG TAT TTC TGT GCT CTG AGA GAC CGA #c
#c : rearranged cDNA

This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 26/09/2002
Author: Géraldine Folch