Alignment of alleles: Goat (Capra hircus) TRAV8S1

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

                                  1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                                 A   D   K   V   T   Q   A   Q   T   T   V   T   G   Q   E   G   E   A   A   T
  AF318531,TRAV8S1*01           GCT GAC AAA GTA ACC CAA GCT CAG ACT ACA GTA ACA GGG CAG GAA GGA GAA GCT GCG ACC

                                                        ___________________CDR1-IMGT____________________
                                 21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40
                                 I   G   C   T   Y   E   T   S   R   T   Y   Y   T                       L   F
  AF318531,TRAV8S1*01           ATA GGC TGC ACG TAT GAA ACC TCT CGG ACT TAT TAT ACT ... ... ... ... ... TTG TTT

                                                                                            _______________CDR2-
                                 41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60 
                                 W   Y   R   Q   F   P   G   G   R   M   E   F   L   I   Y   Q   D   S   N   Q
  AF318531,TRAV8S1*01           TGG TAC AGA CAG TTT CCC GGT GGA AGG ATG GAA TTC CTT ATC TAT CAG GAT AGT AAT CAA

                                IMGT________________
                                 61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80
                                 A                   N   A   R   R   D                               R   Y   S
  AF318531,TRAV8S1*01           GCA ... ... ... ... AAT GCA AGG AGG GAT ... ... ... ... ... ... ... CGC TAC TCT

                                 81  82  83  84 84A 84B 84C  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100
                                 V   N   F   Q   K   G   K   K   T   I   S   L   T   I   S   S   L   H   L   A   D   S   A
  AF318531,TRAV8S1*01           GTA AAC TTT CAA AAG GGA AAA AAA ACC ATC AGC CTC ACC ATC TCT TCC TTG CAC CTG GCT GAC TCA GCG

                                                _CDR3-IMGT_
                                101 102 103 104 105 106 107 
                                 K   Y   F   C   A   L   W
  AF318531,TRAV8S1*01           AAG TAT TTC TGT GCT CTC TGG #c
#c : rearranged cDNA

This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 26/09/2002
Author: Géraldine Folch