Alignment of alleles: Goat (Capra hircus) TRBV16S1

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).


                                1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                               D   A   A   V   I   Q   F   P   R   H   R   I   L   K   A   E   K   E   F   T
  U59413  ,TRBV16S1*01        GAT GCT GCA GTC ATA CAG TTC CCA AGG CAC CGG ATC TTG AAG GCT GAA AAG GAA TTC ACT

                                                      ____________________CDR1-IMGT__________________
                               21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40
                               L   Q   C   S   Q   K   M   N   H   Y   A                               M   Y
  U59413  ,TRBV16S1*01        CTA CAG TGT TCT CAG AAA ATG AAT CAT TAT GCA ... ... ... ... ... ... ... ATG TAC

                                                                                          ______________CDR2-
                               41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60
                               W   Y   R   Q   D   P   G   F   G   L   Q   L   I   Y   Y   S   T   G   P   D
  U59413  ,TRBV16S1*01        TGG TAT CGC CAA GAT CCG GGA TTT GGA CTT CAG CTG ATC TAT TAT TCA ACT GGC CCC GAC

                              IMGT_______________
                               61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80
                               T                   F   K   K   G   D   V   P       E   G   S   V   S   R   D
  U59413  ,TRBV16S1*01        ACC ... ... ... ... TTT AAG AAA GGA GAT GTC CCT ... GAG GGT TCA GTC TCT CGA GAT


                               81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100
                               E           L   D   H   F   P   L   T   M   K   S   A   S   P   N   Q   T   S
  U59413  ,TRBV16S1*01        GAG ... ... CTG GAC CAT TTC CCC CTG ACC ATG AAG TCC GCC AGC CCC AAC CAG ACA TCT


                                              ___CDR3-IMGT___
                              101 102 103 104 105 106 107 108
                               V   Y   F   C   A   S   T   I
  U59413  ,TRBV16S1*01        GTG TAC TTC TGC GCC AGC ACT ATC    #c

#c: rearranged cDNA.

Created: 26/09/2002
Author: Géraldine Folch