Alignment of alleles: Goat (Capra hircus) TRBV18S1

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).


                                1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                               E   A   E   V   T   Q   T   P   R   H   L   I   K   T   K   G   Q   T   A   T
  AF110421,TRBV18S1*01        GAG GCT GAA GTC ACC CAA ACT CCA AGA CAC TTG ATC AAA ACG AAG GGA CAG ACA GCG ACC

                                                      ____________________CDR1-IMGT__________________
                               21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40
                               L   R   C   S   P   M   S   G   H   S   S                               V   S
  AF110421,TRBV18S1*01        CTG AGA TGT TCT CCT ATG TCT GGA CAC AGC AGT ... ... ... ... ... ... ... GTA TCT

                                                                                          ______________CDR2-
                               41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60
                               W   Y   Q   Q   A   R   S   Q   G   P   Q   F   L   F   E   F   Y   E   T   L
  AF110421,TRBV18S1*01        TGG TAC CAA CAG GCC CGG AGT CAG GGC CCC CAG TTC CTC TTT GAG TTT TAT GAA ACT CTG

                              IMGT_______________
                               61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80
                               Q                   R   D   K   G   N   F   S       N   R   F   S   A   K   Q
  AF110421,TRBV18S1*01        CAA ... ... ... ... AGA GAT AAA GGA AAC TTT TCG ... AAT CGG TTC TCA GCA AAA CAG


                               81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100
                               F       R   D   F   S   S   E   L   N   V   N   F   L   K   L   T   D   S   A
  AF110421,TRBV18S1*01        TTC ... CGC GAC TTT AGC TCT GAG CTG AAC GTG AAC TTC TTG AAG CTG ACA GAC TCT GCC

                                              ___CDR3-IMGT___
                              101 102 103 104 105 106 107 108
                               L   Y   L   C   A   S   S   F
  AF110421,TRBV18S1*01        CTG TAC CTC TGT GCC AGC AGC TTT    #c

#c: rearranged cDNA.

Created: 26/09/2002
Author: Géraldine Folch