Alignment of alleles: Goat (Capra hircus) TRBV3S1

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).


                                1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                               A   Q   T   I   H   Q   W   P   S   T   R   V   Q   P   A   G   S   P   L   S
  AF035472,TRBV3S1*01         GCT CAG ACC ATC CAT CAA TGG CCA TCC ACC AGG GTG CAG CCT GCA GGC AGC CCG CTC TCT

                                                      ____________________CDR1-IMGT__________________
                               21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40
                               L   E   C   T   V   K   G   T   S   R   P   N                           L   Y
  AF035472,TRBV3S1*01         CTG GAG TGC ACC GTG AAG GGG ACA TCA AGA CCC AAC ... ... ... ... ... ... CTG TAC

                                                                                          ______________CDR2-
                               41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60
                               W   Y   R   Q   E   A   G   G   S   L   Q   L   L   F   S   S   I   G   V   D
  AF035472,TRBV3S1*01         TGG TAC CGG CAG GAG GCA GGG GGG AGC CTC CAG CTG CTC TTC TCC TCT ATT GGT GTT GAC

                              IMGT_______________
                               61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80
                                                   Q   I   E   P   R   E   F       Q   N   F   E   A   S   R
  AF035472,TRBV3S1*01         ... ... ... ... ... CAG ATA GAA CCT AGG GAG TTC ... CAG AAC TTC GAA GCT TCC AGG


                               81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100
                               P       Q   D   G   Q   F   I   L   S   S   K   K   L   Q   L   N   N   S   G
  AF035472,TRBV3S1*01         CCC ... CAG GAC GGC CAG TTC ATC CTG AGT TCT AAG AAG CTG CAG CTC AAT AAC TCT GGC

                                              ___CDR3-IMGT___
                              101 102 103 104 105 106
                               F   Y   L   C   A   W
  AF035472,TRBV3S1*01         TTC TAC CTC TGC GCC TGG    #c

#c: rearranged cDNA.

Created: 26/09/2002
Author: Géraldine Folch