Alignment of alleles: Goat (Capra hircus) TRBV4S1

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).


                                1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                               D   P   G   I   T   Q   I   P   K   Y   L   V   M   G   M   T   D   K   K   S
  AF035473,TRBV4S1*01         GAC CCT GGG ATC ACT CAG ATA CCA AAA TAC CTA GTC ATG GGA ATG ACG GAC AAG AAA TCT

                                                      ____________________CDR1-IMGT__________________
                               21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40
                               L   K   C   E   Q   H   L   G   H   N   A                               M   Y
  AF035473,TRBV4S1*01         TTG AAA TGT GAG CAA CAT CTG GGA CAT AAT GCT ... ... ... ... ... ... ... ATG TAC

                                                                                          ______________CDR2-
                               41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60
                               W   Y   K   Q   S   A   Q   K   P   P   E   L   M   F   I   H   S   Y   M   K
  AF035473,TRBV4S1*01         TGG TAT AAA CAG AGC GCC CAG AAG CCG CCA GAG CTC ATG TTC ATC CAC AGC TAC ATG AAA

                              IMGT_______________
                               61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80
                               L                   S   G   N   E   S   V   P       S   R   F   W   P   E   C
  AF035473,TRBV4S1*01         CTC ... ... ... ... AGT GGA AAT GAG AGT GTT CCA ... AGC CGC TTC TGG CCT GAA TGC


                               81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100
                               P       D   S   S   Q   C   R   L   D   L   S   A   P   K   P   Q   D   S   A
  AF035473,TRBV4S1*01         CCA ... GAC AGC TCT CAG TGC CGC CTG GAC CTG AGC GCC CCG AAA CCA CAG GAC TCC GCC

                                              ___CDR3-IMGT___
                              101 102 103 104 105 106 107
                               V   Y   L   C   A   S   S
  AF035473,TRBV4S1*01         GTC TAT CTC TGC GCC AGC AGT    #c

#c: rearranged cDNA.

Created: 26/09/2002
Author: Géraldine Folch