Alignment of alleles: Goat (Capra hircus) TRBV5S1

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).


                                1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                               D   A   G   V   T   Q   T   P   R   H   E   V   T   E   K   G   Q   A   V   T
  AF035475,TRBV5S1*01         GAT GCT GGA GTC ACC CAG ACC CCT AGG CAT GAG GTG ACA GAA AAG GGA CAG GCA GTC ACT

                                                      ____________________CDR1-IMGT__________________
                               21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40
                               L   S   C   E   P   I   K   S   H   A   A                               L   F
  AF035475,TRBV5S1*01         CTG AGT TGT GAG CCG ATT AAA AGC CAC GCT GCT ... ... ... ... ... ... ... CTT TTT

                                                                                          ______________CDR2-
                               41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60
                               W   Y   R   Q   T   S   V   R   G   L   E   L   L   I   Y   F   N   N   Q   S
  AF035475,TRBV5S1*01         TGG TAC AGA CAG ACC TCG GTG CGG GGA CTG GAA CTG CTG ATA TAT TTC AAC AAC CAA TCT

                              IMGT_______________
                               61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80
                               P                   V   D   E   S   G   M   P   K   D   R   F   S   A   Q   M
  AF035475,TRBV5S1*01         CCT ... ... ... ... GTC GAC GAG TCA GGG ATG CCA AAG GAC CGA TTC TCA GCT CAG ATG


                               81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100
                               P       N   A   S   F   S   T   L   K   I   Q   P   T   E   P   G   D   S   A
  AF035475,TRBV5S1*01         CCT ... AAC GCA TCG TTC TCC ACT CTG AAA ATC CAG CCC ACA GAG CCT GGG GAC TCG GCC

                                              ___CDR3-IMGT___
                              101 102 103 104 105 106 107
                               T   Y   L   C   A   S   S
  AF035475,TRBV5S1*01         ACG TAC CTC TGT GCC AGC AGC    #c

#c: rearranged cDNA.

Created: 26/09/2002
Author: Géraldine Folch