Alignment of alleles: Goat (Capra hircus) TRBV6S1

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).


                                1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                               G   A   L   L   S   Q   K   P   S   R   A   I   R   Q   R   G   T   S   M   T
  AF035478,TRBV6S1*01         GGT GCT CTC CTC TCT CAA AAG CCA AGC AGG GCC ATC CGT CAA CGT GGG ACC TCC ATG ACG

                                                      ____________________CDR1-IMGT__________________
                               21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40
                               I   E   C   Q   A   D   S   Q   L   N   F                               V   Y
  AF035478,TRBV6S1*01         ATC GAG TGT CAG GCC GAT AGC CAG CTC AAC TTC ... ... ... ... ... ... ... GTG TAC

                                                                                          ______________CDR2-
                               41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60
                               W   Y   R   Q   L   P   G   Q   S   L   V   L   M   A   T   A   N   Q   G   S
  AF035478,TRBV6S1*01         TGG TAC CGT CAG CTT CCA GGA CAG AGC TTG GTG CTG ATG GCT ACA GCC AAT CAG GGC TCC

                              IMGT_______________
                               61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80
                               K   A               T   Y   E   S   E   F   T   E   D   K   F   P   I   S   R
  AF035478,TRBV6S1*01         AAG GCT ... ... ... ACT TAC GAG AGT GAG TTC ACT GAG GAC AAG TTT CCC ATT AGC CGC


                               81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100
                               P       N   L   A   F   S   T   L   T   V   S   N   A   S   S   E   D   S   S
  AF035478,TRBV6S1*01         CCG ... AAC CTG GCG TTC TCA ACT CTG ACT GTG AGC AAC GCG AGC TCC GAA GAC AGC AGC

                                              ___CDR3-IMGT___
                              101 102 103 104 105 106
                               S   Y   F   C   S   A
  AF035478,TRBV6S1*01         TCT TAT TTC TGC AGT GCT    #c

#c: rearranged cDNA.

Created: 26/09/2002
Author: Géraldine Folch