Alignment of alleles: Atlantic cod (Gadus morhua) IGIV1S4

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

                                  1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                                 Q   V   T   V   T   Q   T   P   V       V   S   F   T   P   G   S   T   V   T
  AJ225238,IGIV1S4*01           CAG GTG ACT GTG ACT CAG ACA CCA GTA ... GTG TCC TTT ACT CCA GGA TCC ACA GTC ACA

  AJ225245,IGIV1S4*02           --- --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --T

  AJ225242,IGIV1S4*03           --- --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --T

                                                         __________________CDR1-IMGT____________________
                                 21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40
                                 L   T   C   K   T   N   P   A   V   Y   R   H   P   S   L   G   D   Y   L   F
  AJ225238,IGIV1S4*01           CTG ACC TGT AAA ACA AAC CCT GCA GTT TAT AGA CAT CCT TCT TTA GGA GAT TAT CTA TTC

  AJ225245,IGIV1S4*02           --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --T --- --- --- ---

  AJ225242,IGIV1S4*03           --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --T --- --- --- ---

                                                                                             ______________CDR2-
                                 41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60
                                 W   Y   Q   Q   K   P   G   E   A   P   K   L   I   V   K   L   V   N
  AJ225238,IGIV1S4*01           TGG TAC CAA CAG AAA CCT GGA GAA GCC CCC AAG CTC ATC GTA AAA TTA GTA AAC ... ...

  AJ225245,IGIV1S4*02           --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... ...
                                                                                         D  
  AJ225242,IGIV1S4*03           --- --- --- --- --- --- --- --- --- --- --- --- --- --- G-T --- --- --- ... ...

                                IMGT________________
                                 61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80
                                                     Q   L   V   S   P   T   P       A   R   F   S   G   S   G
  AJ225238,IGIV1S4*01           ... ... ... ... ... CAA CTT GTA TCA CCA ACA CCA ... GCT CGG TTT AGT GGC AGT GGA

  AJ225245,IGIV1S4*02           ... ... ... ... ... --- --- --- --- --- --- --- ... --- --- --- --- --- --- ---

  AJ225242,IGIV1S4*03           ... ... ... ... ... --- --- --- --- --- --- --- ... --- --- --- --- --- --- ---

                                 81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100
                                         S   S   T   D   F   S   L   T   I   N   G   A   Q   R   E   D   A   A
  AJ225238,IGIV1S4*01           ... ... AGC AGC ACT GAC TTC TCT CTG ACC ATC AAC GGC GCC CAG CGC GAA GAC GCA GCA

  AJ225245,IGIV1S4*02           ... ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---

  AJ225242,IGIV1S4*03           ... ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---

                                                _____________CDR3-IMGT______________
                                101 102 103 104 105 106 107 108 109 110 111 112 113
                                 V   Y   H   C   Q   S   Y   H   S   S   G   N   V
  AJ225238,IGIV1S4*01           GTT TAT CAC TGT CAG AGT TAC CAT AGC AGT GGC AAT GTG  #c
                                                         F       Y   P   N   S
  AJ225245,IGIV1S4*02           --- --- --- --- --- --- -T- --C TAT CC- AA- -G- --C  #c

  AJ225242,IGIV1S4*03           --- --- --- --- --- --- --- --- --- --- --- --- ---  #c


#c: rearranged cDNA


This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 21/03/2002
Last updated: Tuesday, 16-Jun-2020 15:25:00 CEST
Author: Nathalie Bosc