Alignment of alleles: Channel catfish (Ictalurus punctatus) IGIV1S1

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

                                  1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                                 Q   A   T   V   T   Q   T   P   A   V   K   S   A   L   P   G   E   T   V   T
  AY165791,IGIV1S1*01           CAA GCC ACA GTA ACT CAG ACT CCT GCA GTG AAA TCT GCT CTT CCA GGA GAA ACA GTC ACC
                                     V  
  L25533  ,IGIV1S1*02           --- -T- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---

                                                        _________________CDR1-IMGT______________________
                                 21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40
                                 I   N   C   R   T   N   P   A   V   Y   Y   Y   S   S   Y   G   H   Y   L   H
  AY165791,IGIV1S1*01           ATC AAC TGT AGA ACC AAT CCG GCA GTG TAT TAT TAC AGT TCA TAC GGC CAT TAT TTA CAC

  L25533  ,IGIV1S1*02           --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---

                                                                                            _____________CDR2-IM
                                 41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60
                                 W   Y   Q   Q   K   P   G   E   A   P   K   L   L   I   K   F   A   N
  AY165791,IGIV1S1*01           TGG TAT CAG CAG AAA CCT GGA GAA GCT CCT AAG CTC CTG ATT AAG TTT GCG AAT ... ...

  L25533  ,IGIV1S1*02           --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... ...

                                GT__________________
                                 61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80
                                                     Q   L   Q   S   G   I   P       A   R   F   S   G   S   G
  AY165791,IGIV1S1*01           ... ... ... ... ... CAG CTA CAG TCG GGT ATT CCA ... GCT CGT TTC AGT GGC AGT GGA
                                                             H  
  L25533  ,IGIV1S1*02           ... ... ... ... ... --- --- --C --- --- --- --- ... --- --- --- --- --- --- ---

                                 81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100
                                         S   G   S   D   F   T   L   T   I   S   G   V   Q   T   E   D   A   G
  AY165791,IGIV1S1*01           ... ... TCT GGA TCT GAT TTC ACT CTG ACC ATC AGT GGA GTC CAG ACT GAA GAT GCA GGA

  L25533  ,IGIV1S1*02           ... ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---

                                                ___________CDR3-IMGT________________
                                101 102 103 104 105 106 107 108 109 110 111 112 113
                                 D   Y   Y   C   Q   S   Y   H   S   G   V   C   S
  AY165791,IGIV1S1*01           GAT TAT TAC TGT CAG AGT TAC CAC AGT GGT GTG TGT TCA
                                                                         G   M
  L25533  ,IGIV1S1*02           --- --- --- --- --- --- --- --- --- --- -GT ATG       #c
#c: rearranged cDNA

This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 03/03/2003
Author: Nathalie Bosc