Alignment of alleles: Channel catfish (Ictalurus punctatus) IGIV1S6

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

                                  1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                                                                                                               
  L25540  ,IGIV1S6*01
                                                         __________________CDR1-IMGT____________________        
                                 21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40
                                                                                                               
  L25540  ,IGIV1S6*01
                                                                                             ______________CDR2-
                                 41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60
                                 W   Y   Q   Q   E   P   G   E   A   P   K   L   L   I   K   Y   V   K         
  L25540  ,IGIV1S6*01           TGG TAC CAA CAG GAG CCG GGA GAA GCT CCT AAA CTC CTG ATT AAA TAT GTA AAG ... ...

                                IMGT________________                                                            
                                 61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80
                                                     Q   L   Q   S   G   F   P       A   R   F   S   G   S   G 
  L25540  ,IGIV1S6*01           ... ... ... ... ... CAG CTA CAG TCG GGT TTT CCA ... GCT CGT TTC AGT GGC AGT GGA

                                 81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100
                                         S   G   S   D   F   T   L   T   I   S   G   V   Q   T   E   D   T   G  
  L25540  ,IGIV1S6*01           ... ... TCT GGA TCT GAT TTC ACT CTG ACC ATC AGT GGA GTC CAG ACT GAA GAT ACA GGA 

                                                _______________CDR3-IMGT_________________
                                101 102 103 104 105 106 107 108 109 110 111 112 113 114
                                 D   Y   Y   C   Q   S   H   H   E   I   T   G   Y   W  
  L25540  ,IGIV1S6*01           GAT TAT TAC TGT CAG AGT CAC CAT GAA ATC ACT GGC TAC TGG T   #c
#c: rearranged cDNA

This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 03/03/2003
Author: Nathalie Bosc