Alignment of alleles: Torafugu (Takifugu rubripes) TRAJ (overview)

Only one sequence for each allele is shown. Other known sequences are shown in the individual Alignments of alleles.

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

The F, G and G of the FGXG motif are shown in brown, in the allele *01 amino acid sequence. 

                                     T   Q   S   G   I   Q   K   L   Q   F   G   S   G   T   K   L   V   I   G   D
  AF110525,TRAJ1*01              TG ACT CAA TCT GGA ATC CAG AAG CTC CAA TTT GGA TCA GGA ACC AAA CTG GTT ATC GGT GAT G

                                         N   V   G   I   G   Q   L   T   F   G   Q   G   T   R   L   K   I   H   D
  AF110525,TRAJ2*01                  TG AAT GTT GGA ATC GGA CAA TTA ACG TTT GGA CAA GGA ACA CGA CTG AAA ATA CAT GAC C

                                     T   R   S   G   L   Q   K   L   Q   F   G   S   G   T   K   L   V   I   S   D
  AF110525,TRAJ3*01              TG ACT CGA TCT GGG TTG CAG AAG CTC CAA TTT GGA TCA GGA ACC AAA CTG GTT ATC AGT GAT G

                                         N   V   G   T   R   Q   I   T   F   G   Q   G   T   R   L   K   I   H   D
  AF110525,TRAJ4*01                  TG AAT GTT GGA ACC AGA CAA ATA ACG TTT GGA CAA GGA ACA CGA CTG AAA ATA CAT GAC C

                                     T   Q   S   G   T   Q   K   L   Q   F   G   S   G   T   K   L   V   I   S   D
  AF110525,TRAJ5*01              TG ACT CAA TCT GGA ACC CAG AAG CTC CAA TTT GGA TCA GGA ACC AAA CTG GTT ATC AGT GAT G

                                     S   S   Y   G   G   D   K   L   S   F   A   S   G   T   K   V   L   V   E   S
  AF110525,TRAJ6*01                 TCT TCA TAC GGA GGA GAT AAA CTC AGT TTT GCT TCT GGG ACT AAA GTG TTG GTG GAA TCA A

                                     S   G   S   G   G   W   K   F   L   F   G   K   G   V   K   V   M   V   R   D
  AF110525,TRAJ7*01              TG TCT GGC TCA GGA GGG TGG AAG TTC TTG TTT GGG AAG GGG GTC AAA GTG ATG GTC CGA GAC A

                                     D   S   S   G   I   N   T   I   L   F   G   N   G   I   R   L   S   V   N   N
  AF110525,TRAJ8*01               T GAT TCA TCT GGA ATC AAT ACA ATC CTG TTT GGA AAT GGA ATC AGA CTT TCC GTT AAC AAC A

                                         T   S   G   N   I   K   L   V   F   G   D   G   T   R   V   Q   I   Q   S
  AF110525,TRAJ9*01                  TG ACT TCT GGA AAT ATT AAA CTT GTG TTT GGA GAT GGA ACC AGA GTC CAA ATC CAG AGC A

                                     N   S   G   A   R   D   K   L   V   F   G   P   G   T   R   L   T   S   E   T
  AF110525,TRAJ10*01             TG AAT AGT GGA GCA AGA GAT AAG CTG GTG TTT GGA CCT GGA ACC AGA TTA ACC AGT GAA ACC A

                                     T   Q   S   G   I   Q   K   L   Q   F   G   S   G   T   K   L   V   I   S   D
  AF110525,TRAJ13*01             TG ACT CAA TCT GGA ATC CAG AAG CTC CAA TTT GGA TCA GGA ACC AAA CTG GTT ATC AGT GAT G

                                         T   S   G   T   Y   K   L   V   F   G   G   G   T   R   V   Q   I   Q   S
  AF110525,TRAJ14*01                 TG ACT TCT GGA ACT TAT AAA CTT GTG TTT GGA GGT GGA ACC AGA GTC CAA ATC CAG AGC A

                                     N   S   G   G   G   N   K   L   V   F   G   P   G   T   R   L   T   I   E   T
  AF110525,TRAJ15*01             TG AAT AGT GGA GGA GGA AAT AAA CTG GTG TTT GGA CCT GGA ACC AGA TTA ACC ATT GAA ACC A

Created: 27/06/2003
Author: Nathalie Bosc