Alignment of alleles: Torafugu (Takifugu rubripes) TRAV1S4

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

N (Asn, asparagine) of potential N-glycosylation sites (NXS/T, where X is different from P), (N-linked glycosylation) is shown is green (site is underlined in CHS and in pages edited before 14/10/2009).

                                  1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                                 E   D   K   V   M   Q   P   P   E   D   V   V   A   A   E   G   D   T   V   T 
  AF110526,TRAV1S4*01           GAA GAC AAA GTG ATG CAG CCA CCA GAA GAT GTT GTT GCT GCT GAA GGA GAC ACT GTT ACA
                                                                                                               
  AF269198,TRAV1S4*01           --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---

                                                        _________________CDR1-IMGT______________________        
                                 21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40
                                 L   D   C   T   F   Q   T   T   D   P   S   P   N                       L   F 
  AF110526,TRAV1S4*01           CTG GAC TGT ACT TTT CAG ACC ACC GAC CCA TCC CCA AAC ... ... ... ... ... TTG TTC
                                                                                                               
  AF269198,TRAV1S4*01           --- --- --- --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... --- ---

                                                                                            _____________CDR2-IM
                                 41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60
                                 W   Y   K   Q   D   G   T   S   R   P   Q   F   I   L   S   K   F   T   F   G
  AF110526,TRAV1S4*01           TGG TAC AAA CAG GAT GGG ACC AGC AGA CCC CAG TTC ATC CTG AGC AAG TTC ACC TTT GGT
                                                                                                               
  AF269198,TRAV1S4*01           --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---

                                GT__________________                                                            
                                 61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80
                                 Q   G   K   T   E   D   E   F   K   E                               R   F   S 
  AF110526,TRAV1S4*01           CAG GGG AAA ACA GAA GAT GAG TTT AAG GAG ... ... ... ... ... ... ... AGA TTT TCC
                                                                                                               
  AF269198,TRAV1S4*01           --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... ... --- --- ---


                                 81  82  83  84 84A 84B 84C  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100
                                 S   T   L   N   S   T   M   K   S   A   P   L   K   I   Q   E   L   Q   L   S   D   S   A
  AF110526,TRAV1S4*01           TCC ACA CTG AAC TCC ACC ATG AAA TCA GCT CCT CTG AAG ATC CAG GAG CTT CAG CTG TCA GAC TCT GCA
                                                                                                               
  AF269198,TRAV1S4*01           --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---

                                                ___CDR3-IMGT___
                                101 102 103 104 105 106 107 108 
                                 V   Y   Y   C   A   L   R
  AF110526,TRAV1S4*01           GTG TAC TAC TGT GCT CTG AGG CC
                                                                        
  AF269198,TRAV1S4*01           --- --- --- --- --- --- --- --

This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 30/06/2003
Author: Nathalie Bosc