Alignment of alleles: Torafugu (Takifugu rubripes) TRAV1S5

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

N (Asn, asparagine) of potential N-glycosylation sites (NXS/T, where X is different from P), (N-linked glycosylation) is shown is green (site is underlined in CHS and in pages edited before 14/10/2009).

                                  1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
E D K V M Q P P E D V V A A E G D T V T
AF110526,TRAV1S5*01 GAA GAC AAA GTG ATG CAG CCA CCA GAA GAT GTT GTT GCT GCT GAA GGA GAC ACT GTT ACA

AF269199,TRAV1S5*01 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---

_________________CDR1-IMGT______________________
21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40
L D C T F Q T T D T N L Y L F
AF110526,TRAV1S5*01 CTG GAC TGT ACT TTT CAG ACC ACC GAC ACA AAC CTG TAT ... ... ... ... ... TTG TTC

AF269199,TRAV1S5*01 --- --- --- --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... --- ---

_____________CDR2-IM 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 W Y K Q D G T S R P Q F I L S K F T I G AF110526,TRAV1S5*01 TGG TAC AAA CAG GAT GGG ACC AGC AGA CCC CAG TTC ATC CTG AGC AAG TTC ACC ATC GGT

AF269199,TRAV1S5*01 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---

GT__________________
61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80
K G K T E D E F K E R F S
AF110526,TRAV1S5*01 AAG GGG AAA ACA GAA GAT GAG TTC AAG GAG ... ... ... ... ... ... ... AGA TTT TCC

AF269199,TRAV1S5*01 --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... ... --- --- ---

81 82 83 84 84A 84B 84C 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
S T L N S T M K S A P L K I Q E L Q L S D S A
AF110526,TRAV1S5*01 TCC ACA CTG AAC TCC ACC ATG AAA TCA GCT CCT CTG AAG ATC CAG GAG CTT CAG CTG TCA GAC TCT GCA

AF269199,TRAV1S5*01 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---

___CDR3-IMGT___ 101 102 103 104 105 106 107 108 V Y Y C A L R AF110526,TRAV1S5*01 GTG TAC TAC TGT GCT CTG AGG CC

AF269199,TRAV1S5*01 --- --- --- --- --- --- --- --



This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 30/06/2003
Author: Nathalie Bosc