Alignment of alleles: Torafugu (Takifugu rubripes) TRAV1S7

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

N (Asn, asparagine) of potential N-glycosylation sites (NXS/T, where X is different from P), (N-linked glycosylation) is shown is green (site is underlined in CHS and in pages edited before 14/10/2009).

                                  1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
E D K V M Q Q P E D V V A A E G D T V T
AF269222,TRAV1S7*01 GAA GAC AAA GTG ATG CAG CAA CCA GAA GAT GTT GTT GCT GCT GAA GGT GAC ACT GTT ACA

_________________CDR1-IMGT______________________
21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40
L D C T F Q T T D T N L Y L F
AF269222,TRAV1S7*01 CTG GAC TGT ACT TTT CAG ACC ACC GAC ACA AAC CTG TAT ... ... ... ... ... TTG TTC

_____________CDR2-IM 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 W Y K Q E G T S R P Q F I L S R F K G D AF269222,TRAV1S7*01 TGG TAC AAA CAG GAG GGG ACC AGC AGA CCC CAG TTC ATC CTG AGC AGG TTC AAA GGT GAT

GT__________________
61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80
K G K T E D E F K E R F S
AF269222,TRAV1S7*01 AAG GGG AAA ACA GAA GAT GAG TTT AAG GAG ... ... ... ... ... ... ... AGA TTT TCC

81 82 83 84 84A 84B 84C 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
S T V N S T M K S A P L K I Q E L Q L S D S A
AF269222,TRAV1S7*01 TCC ACA GTG AAC TCC ACC ATG AAA TCA GCT CCT CTG AAG ATC CAG GAG CTT CAG CTG TCA GAC TCT GCA

_CDR3-IMGT_ 101 102 103 104 105 106 107 V Y Y C A L S AF269222,TRAV1S7*01 GTG TAC TAC TGT GCT CTG AGC #c


#c: rearranged cDNA


This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 30/06/2003
Author: Nathalie Bosc