Alignment of alleles: Torafugu (Takifugu rubripes) TRAV4S1

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

                                  1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                                 I   S   P   V   P   G   M   K   N   G   I   S   S   R   E   G   E   D   V   T 
  AF110525,TRAV4S1*01           ATT TCC CCT GTT CCA GGG ATG AAA AAT GGA ATC AGC AGC AGA GAA GGA GAA GAT GTA ACG
                                                                                                               
  AF269209,TRAV4S1*01           --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---

                                                        _________________CDR1-IMGT______________________        
                                 21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40
                                 L   R   C   N   Y   E   T   S   H   S   D   V   Y                       L   F 
  AF110525,TRAV4S1*01           CTC AGA TGT AAC TAT GAG ACT TCA CAT TCT GAT GTT TAT ... ... ... ... ... CTG TTC
                                                                                                               
  AF269209,TRAV4S1*01           --- --- --- --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... --- ---

                                                                                            _____________CDR2-IM
                                 41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60
                                 W   Y   K   H   Q   S   D   Y   E   A   P   Q   F   I   L   W   K   G   A   R
  AF110525,TRAV4S1*01           TGG TAC AAA CAC CAG TCT GAC TAT GAG GCA CCC CAG TTT ATT CTC TGG AAA GGA GCA AGA
                                                                                                               
  AF269209,TRAV4S1*01           --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---

                                GT__________________                                                            
                                 61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80
                                 S   N   T   G       E   E   N   I   P                               D   K   R 
  AF110525,TRAV4S1*01           AGC AAC ACA GGC ... GAG GAA AAC ATC CCT ... ... ... ... ... ... ... GAT AAG AGA
                                                                                                               
  AF269209,TRAV4S1*01           --- --- --- --- ... --- --- --- --- --- ... ... ... ... ... ... ... --- --- ---


                                 81  82  83  84 84A 84B 84C  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100
                                 Y   R   C   N   T   G   Q   Q   E   S   E   L   T   I   T   D   V   T   L   A   D   S   A
  AF110525,TRAV4S1*01           TAC AGA TGC AAC ACA GGG CAA CAA GAA AGT GAA CTG ACC ATT ACA GAT GTG ACG CTG GCA GAC TCG GCT
                                                                                                               
  AF269209,TRAV4S1*01           --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---

                                                ___CDR3-IMGT___
                                101 102 103 104 105 106 107 108 
                                 V   Y   Y   C   A   L   R
  AF110525,TRAV4S1*01           GTG TAC TAC TGC GCT CTG AGG GC
                                                                        
  AF269209,TRAV4S1*01           --- --- --- --- --- --- --- --

This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 30/06/2003
Author: Nathalie Bosc