Alignment of alleles: African clawed frog (Xenopus laevis) IGHV5S1

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

                                  1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                                 D   I   E   L   V   Q   P   S   S       E   I   K   S   P   G   E   S   V   K
  M24677  ,IGHV5S1*01           GAT ATT GAG CTT GTT CAG CCA AGT TCA ... GAA ATC AAA TCA CCT GGT GAG AGT GTT AAA

                                                        _________________CDR1-IMGT______________________
                                 21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40
                                 L   S   C   K   T   S   G   Y   T   F   T   D   Y   W                   I   H
  M24677  ,IGHV5S1*01           CTG TCG TGC AAG ACA TCA GGT TAC ACA TTC ACT GAC TAC TGG ... ... ... ... ATA CAC

                                                                                            _____________CDR2-IM
                                 41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60
                                 W   I   Q   Q   V   P   G   K   G   L   Q   W   M   G   V   I   D   P   S   D
  M24677  ,IGHV5S1*01           TGG ATA CAA CAG GTT CCT GGG AAA GGA TTG CAA TGG ATG GGA GTG ATA GAT CCA TCA GAT

                                GT__________________
                                 61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80
                                 A   Y               T   S   Y   S   P   S   Y   Q   G   R   C   Q   I   S   T
  M24677  ,IGHV5S1*01           GCA TAT ... ... ... ACA AGC TAC TCA CCC TCA TAC CAA GGA AGG TGC CAA ATT AGC ACT

                                 81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100
                                 D   N   S   Q   S   T   A   F   L   Q   L   N   N   L   K   V   E   D   T   A
  M24677  ,IGHV5S1*01           GAT AAT TCA CAA AGC ACA GCA TTC CTG CAA CTG AAC AAT CTA AAA GTG GAG GAC ACT GCC

                                                CDR3-IMGT__
                                101 102 103 104 105 106
                                 I   Y   Y   C   A   R
  M24677  ,IGHV5S1*01           ATT TAT TAC TGT GCT AGA #c
#c : rearranged cDNA

This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 06/08/2003
Author: Delphine Guiraudou